Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,553,013 – 7,553,130 |
Length | 117 |
Max. P | 0.890698 |
Location | 7,553,013 – 7,553,130 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 79.57 |
Mean single sequence MFE | -22.58 |
Consensus MFE | -14.22 |
Energy contribution | -14.36 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.08 |
Mean z-score | -2.07 |
Structure conservation index | 0.63 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7553013 117 + 22224390 GCGCAUGUUGUUGCUGUGCAGCGCAAACGACGACGACAGCGACAAAUGUGUAGAUCAACAGAUCAGUCACUCGAAAAGCGAAACUAAAAAGUAACCAAAUAAAAAAAAUGAAACA--AA ((((((.(((((((((((..(((....)).)..).)))))))))))))))).((((....))))..(((.(((.....))).(((....)))................)))....--.. ( -25.80) >DroPse_CAF1 107523 101 + 1 ---------GUUGCCGUGCAGAGUAGUCGACUACGACAGGGACAAAUGUGGGGAUCAACAGAUCAUUCACUCAAA-------ACGAAAACGUAACGAAA--AUAAGAAUGAAAGGAAAA ---------(((((.((.(...((((....)))).....).))....(((((((((....)))).))))).....-------........)))))....--.................. ( -18.40) >DroSec_CAF1 45595 116 + 1 GCGCAUGUUGUUGCUGUGCAGCGCAAACGACGACGACAGCGACAAAUGUGUAGAUCAACAGAUCAGUCACUCAAAAAGCGAAACUAAAAAGUAACCAAAUAAA-AAAAUGAAACA--AA ((((((.(((((((((((..(((....)).)..).)))))))))))))))).((((....)))).......................................-...........--.. ( -24.50) >DroSim_CAF1 44899 116 + 1 GCGCAUGUUGUUGCUGUGCAGCGCAAACGACGACGACAGCGACAAAUGUGUAGAUCAACAGAUCAGUCACUCAAAAAGCGAAACUAAAAAGUAACCAAAUAAA-AAAAUGAAACA--AA ((((((.(((((((((((..(((....)).)..).)))))))))))))))).((((....)))).......................................-...........--.. ( -24.50) >DroPer_CAF1 113417 101 + 1 ---------GUUGCCGUACAGAGUGGUCGACUACGACAGGGACAAAUGUGGAGAUCAACAGAUCAUUCACUCAAA-------ACGAAAACGUAACGAAA--AUAAGAAUGAAAGGAAAA ---------((((((((...(((((((((....))))...............((((....))))...)))))...-------))).....)))))....--.................. ( -19.70) >consensus GCGCAUGUUGUUGCUGUGCAGCGCAAACGACGACGACAGCGACAAAUGUGUAGAUCAACAGAUCAGUCACUCAAAAAGCGAAACUAAAAAGUAACCAAAUAAAAAAAAUGAAACA__AA .(((.....((((((((.(..((.......))..)))))))))....(((..((((....))))...))).......)))..(((....)))........................... (-14.22 = -14.36 + 0.14)
Location | 7,553,013 – 7,553,130 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 79.57 |
Mean single sequence MFE | -22.92 |
Consensus MFE | -16.18 |
Energy contribution | -14.90 |
Covariance contribution | -1.28 |
Combinations/Pair | 1.20 |
Mean z-score | -1.50 |
Structure conservation index | 0.71 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7553013 117 - 22224390 UU--UGUUUCAUUUUUUUUAUUUGGUUACUUUUUAGUUUCGCUUUUCGAGUGACUGAUCUGUUGAUCUACACAUUUGUCGCUGUCGUCGUCGUUUGCGCUGCACAGCAACAACAUGCGC ..--...................((((((((...((.....))....))))))))((((....))))..(.(((((((.(((((.((.(.((....))).))))))).)))).))).). ( -25.20) >DroPse_CAF1 107523 101 - 1 UUUUCCUUUCAUUCUUAU--UUUCGUUACGUUUUCGU-------UUUGAGUGAAUGAUCUGUUGAUCCCCACAUUUGUCCCUGUCGUAGUCGACUACUCUGCACGGCAAC--------- ..................--..(((..(((....)))-------..)))(((...((((....))))..)))..(((.((.(((.((((....))))...))).))))).--------- ( -18.30) >DroSec_CAF1 45595 116 - 1 UU--UGUUUCAUUUU-UUUAUUUGGUUACUUUUUAGUUUCGCUUUUUGAGUGACUGAUCUGUUGAUCUACACAUUUGUCGCUGUCGUCGUCGUUUGCGCUGCACAGCAACAACAUGCGC ..--...........-.......((((((((...((.....))....))))))))((((....))))..(.(((((((.(((((.((.(.((....))).))))))).)))).))).). ( -25.90) >DroSim_CAF1 44899 116 - 1 UU--UGUUUCAUUUU-UUUAUUUGGUUACUUUUUAGUUUCGCUUUUUGAGUGACUGAUCUGUUGAUCUACACAUUUGUCGCUGUCGUCGUCGUUUGCGCUGCACAGCAACAACAUGCGC ..--...........-.......((((((((...((.....))....))))))))((((....))))..(.(((((((.(((((.((.(.((....))).))))))).)))).))).). ( -25.90) >DroPer_CAF1 113417 101 - 1 UUUUCCUUUCAUUCUUAU--UUUCGUUACGUUUUCGU-------UUUGAGUGAAUGAUCUGUUGAUCUCCACAUUUGUCCCUGUCGUAGUCGACCACUCUGUACGGCAAC--------- ..................--.........(((.((((-------...(((((...((((....))))...............((((....)))))))))...)))).)))--------- ( -19.30) >consensus UU__UGUUUCAUUUUUUUUAUUUGGUUACUUUUUAGUUUCGCUUUUUGAGUGACUGAUCUGUUGAUCUACACAUUUGUCGCUGUCGUCGUCGUUUGCGCUGCACAGCAACAACAUGCGC ........((((((.............(((....)))..........))))))..((((....)))).........((.(((((((.(((.....))).)).))))).))......... (-16.18 = -14.90 + -1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:27 2006