Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,551,614 – 7,551,706 |
Length | 92 |
Max. P | 0.995732 |
Location | 7,551,614 – 7,551,706 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 92.61 |
Mean single sequence MFE | -16.56 |
Consensus MFE | -14.04 |
Energy contribution | -14.12 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -2.31 |
Structure conservation index | 0.85 |
SVM decision value | 2.61 |
SVM RNA-class probability | 0.995732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7551614 92 + 22224390 UUUAACGAAAACGAAAAACGUGUGUGUUGGAAAAUAGAACACUCACACACAAAAAACCAAAGCAGAAGCUCGUGUAGAAGCAGCUGAAAAAU ...................(((((((.((..........))..)))))))............(((..((((.....).)))..)))...... ( -16.60) >DroSec_CAF1 44243 92 + 1 UUUAACGAAAACGAAAAACGUGUGUGUUGGAAAAUAGAACACUCACACACAGAAAAACAAAGCAGAAGCUCGUGUAGAAGCAGCUGAAAAAU ...................(((((((.((..........))..)))))))............(((..((((.....).)))..)))...... ( -16.60) >DroSim_CAF1 43556 92 + 1 UUUAACGAAAACGAAAAACGUGUGUGUUGGAAAAUAGAACACUCACACACAGAAAAACAAAGCAGAAGCUCGUGUAGAAGCAGCUGAAAAAU ...................(((((((.((..........))..)))))))............(((..((((.....).)))..)))...... ( -16.60) >DroEre_CAF1 55537 85 + 1 AUUAACGAAA-------ACGUGUGUGUUCGAAAAUAGAACACUCAUACACAGAAAAACAAAGCAGAAGCUCAAGUAGAAGCAGCUGAAAAAU ..........-------..((((((((((.......))))))....))))............(((..(((........)))..)))...... ( -15.70) >DroYak_CAF1 45351 92 + 1 AUUAACGAAAACGAAAAACGUGUGUGUUGGAAAAUAGAACACUCGCACACAGAAAAACAAAGCUGAAGCUCAUGUAGAAGCAGCUGAAAAAU ...................(((((((.((..........))..)))))))..........(((((...((.....))...)))))....... ( -17.30) >consensus UUUAACGAAAACGAAAAACGUGUGUGUUGGAAAAUAGAACACUCACACACAGAAAAACAAAGCAGAAGCUCGUGUAGAAGCAGCUGAAAAAU ...................(((((((.((..........))..)))))))............(((..((((.....).)))..)))...... (-14.04 = -14.12 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:25 2006