Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,550,950 – 7,551,043 |
Length | 93 |
Max. P | 0.828698 |
Location | 7,550,950 – 7,551,043 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 77.39 |
Mean single sequence MFE | -24.79 |
Consensus MFE | -14.27 |
Energy contribution | -15.05 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.23 |
Mean z-score | -1.87 |
Structure conservation index | 0.58 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.828698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7550950 93 + 22224390 --------UUCGUCGCAUUUACAUAAAUGAU------------ACACACUGUAUUAAGCCGCUUCUGUGUGGGUGAACAUA--UGUCACACGCAGCGGCGAAAAAGUCAAUCACA- --------((((((((...........((((------------((.....))))))..((((......))))((((.(...--.))))).....)))))))).............- ( -24.70) >DroSec_CAF1 43585 93 + 1 --------UUCGUCGCAUUUACAUAAAUGCU------------ACACACUGUAUUAAACCGCUUCUGUGUGGGUGAACAUA--UGUCACACGCAGCGGCGAAAAAGUCAAUCACA- --------((((((((((((....)))))).------------.....((((......((((......))))((((.(...--.)))))..)))).)))))).............- ( -24.30) >DroSim_CAF1 42892 93 + 1 --------UUCGUCGCAUUUACAUAAAUUCU------------ACACACUGUAUUAAACCGCUUCUGUGUGGGUGAACAUA--UGUCACACGCAGCGGCGAAAAAGUCAAUCACA- --------((((((((.............((------------(((((..((........))...)))))))((((.(...--.))))).....)))))))).............- ( -24.10) >DroEre_CAF1 54852 78 + 1 --------------GCAUUUACAUAAAU----------------------GUAUUAAAAUGCUUCUGUGUGGGUUAACAUA--UGUCACACACAGCGGCGAAAAAGUCAAUCACAU --------------((((((....))))----------------------)).......((((.(((((((..........--.....))))))).))))................ ( -17.26) >DroYak_CAF1 44679 94 + 1 --------UUCAUCGCAUUUACAUAAAUGCU------------ACACACUGUAUUAAACUGCUUCUGUGUGGGUGAACAUA--UGUCACACGCAGCGGCGAAAAAGUCAAUCACAU --------(((...((((((....)))))).------------.................(((.((((((((..(......--)..).))))))).)))))).............. ( -20.40) >DroPer_CAF1 110677 116 + 1 UUCUUUCAUUCUUCGCAUUUACAUAAAUGUGCUACGUUGUUCCGUGCGCUGUGGAGCGACGCGUCCGUGUGGGUGCACACAUGUGUCGCGAGGAGAGGCGAAAAAGUCAAUCACAC ........((((((((.((((((.....((((.(((......)))))))))))))..(((((((..(((((....)))))))))))))))))))).(((......)))........ ( -38.00) >consensus ________UUCGUCGCAUUUACAUAAAUGCU____________ACACACUGUAUUAAACCGCUUCUGUGUGGGUGAACAUA__UGUCACACGCAGCGGCGAAAAAGUCAAUCACA_ ..............((((((....)))))).............................((((.((((((..(((.(((....)))))))))))).))))................ (-14.27 = -15.05 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:25 2006