Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,549,597 – 7,549,698 |
Length | 101 |
Max. P | 0.910769 |
Location | 7,549,597 – 7,549,698 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 72.35 |
Mean single sequence MFE | -36.95 |
Consensus MFE | -12.39 |
Energy contribution | -11.70 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.44 |
Mean z-score | -2.35 |
Structure conservation index | 0.34 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910769 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7549597 101 + 22224390 UUUCGCUUGCUUCCAGUUUCC----AAUUUUCCCGUCUUCCAAGCGGGGG--GCGUGAAAAGAAGU-----GGAAAUAACAGAAGCAGCAGCAGCA---ACAACAUA---GCGGGGGA (..((((((((((..((((((----(.(((((.((((((((....)))))--))).)))))....)-----))))))....))))))((....)).---.......)---)))..).. ( -38.60) >DroPse_CAF1 102261 114 + 1 UUUUGCUUAGUUUUUGUUUGUUGGUGAUUGUUCUACCU--CGUGCGGGCAAUGCGACAAAUGCAGUACGGGGGGCGUCACAGGAGCAAGAACA--AACCACAAGGCAGACGCGGGGGA .....((..((.(((((((..((((..(((((((.(((--(((((..(((.(......).))).)))))))).((.((....)))).))))))--)))))..))))))).))..)).. ( -37.70) >DroSec_CAF1 42295 103 + 1 UUUCGCUUGCUUCCAGUUUCC----AAUUUUCCCGUCUUCCAAGCGGGGG--GCGUAAAAAGAAGU-----GGAAAUAACAGAAGCAGCAGCAACAACAACAACAUA---GCGGGGG- (..((((((((((..((((((----(.((((..((((((((....)))))--)))..))))....)-----))))))....))))))...................)---)))..).- ( -32.80) >DroEre_CAF1 53490 101 + 1 UUUCGCUUGCUUCCAGUUUCC----AGUUUUCCCGUUUUCCAAGCGGGGG--GCGUGAAA---AGU-----GGAAAUAACAGAAGCAGCAGCAGCAACAACAACAUA---GCGGGGGA (..((((((((((..((((((----(.(((((.((((..((....))..)--))).))))---).)-----))))))....))))))((....))...........)---)))..).. ( -39.90) >DroYak_CAF1 43306 104 + 1 UUUCGCUUGCUUCCAGUUUCC----AAUUUUCCCGUUUUCCAAGCGGGGG--GCGUGAAAAGAAGU-----GGAAAUAACAGAAGCAGCAGCAGCAACAACAACAUA---GCGGGGGA (..((((((((((..((((((----(.(((((.((((..((....))..)--))).)))))....)-----))))))....))))))((....))...........)---)))..).. ( -37.00) >DroPer_CAF1 108146 114 + 1 UUUUGCUUAGUUUUCGUUUGUUGGUGAUUGUUCUACCU--CGUGCGGGCAAUGCGACAAAUGCAGUACGGGGGGCGUCACAGGAGCAAGAACA--AACCACAAGGCAGACGCGGGGGA ..........((..(((((((..(((.(((((((.(((--(((((..(((.(......).))).)))))))).((.((....)))).))))))--)..)))...)))))))..))... ( -35.70) >consensus UUUCGCUUGCUUCCAGUUUCC____AAUUUUCCCGUCUUCCAAGCGGGGG__GCGUGAAAAGAAGU_____GGAAAUAACAGAAGCAGCAGCAGCAACAACAACAUA___GCGGGGGA (..((((((((((..((((((.....((((((((((.......))))).............))))).....))))))....)))))))......................)))..).. (-12.39 = -11.70 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:24 2006