Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,545,686 – 7,545,804 |
Length | 118 |
Max. P | 0.552898 |
Location | 7,545,686 – 7,545,804 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 90.49 |
Mean single sequence MFE | -34.92 |
Consensus MFE | -30.10 |
Energy contribution | -30.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.26 |
Structure conservation index | 0.86 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.552898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7545686 118 + 22224390 -UUUCAAGCGAGUGCCCACUGUGCGCCAAACAGUGCGUGCUGGCGAAUGGUUAGCAAUGGGAUGAAAACUUUCGACAAACACUGUGCUCGUUUGUUUGUUUGUUUGACACACUCGUACA -......(((((((((((....((((......)))).(((((((.....))))))).))))..........((((((((((....((......)).)))))).))))..)))))))... ( -35.90) >DroSec_CAF1 38762 117 + 1 -UUUCAAGCGAGUGUCCACUGUG-ACCAAACAGUGCGUGCUGGCGAAUGGUUAGCAAUGGGAUGAAAACUUUCGACAAACACUGUGCUCGUUUGUUUGUUUUUUUGGCACACUCGUACA -......(((((((((((((((.-.....)))))...(((((((.....))))))).......((((((....(((((((.........))))))).))))))..)).))))))))... ( -35.60) >DroSim_CAF1 39152 117 + 1 -UUUCAAGCGAGUGACCACUGUG-ACCAAACAGUGCGUGCUGGCGAAUGGUUAGCAAUGGGAUGAAAACUUUCGACAAACACUGUGCUCGUUUGUUUGUUUGUUUGGCACACUCGUACA -......(((((((((((((((.-.....)))))).))((..(((((.((((..((......))..))))))))(((((((....((......)).))))))))..)).)))))))... ( -35.20) >DroEre_CAF1 49697 115 + 1 -UUUCCAACGAGUGUUCACUGUA-GCGCAACAGUGCGUGCUGGCAAAUGGUUAGCAAUGUGAUGAAAACUUUUGACAAACACUGCGCUCAUUUGUUUGUUUGUUUGC--CGCUCGUACA -......(((((((.((((....-((((....)))).(((((((.....)))))))..))))...........((((((((..(((......))).))))))))...--)))))))... ( -33.80) >DroYak_CAF1 39534 118 + 1 GUUUCAAGCGAGUGCUCACUGUA-AGCGAUCAGUGCGUGCUGGCAAAUGGUUAGCAAUGGGAUGAAAACUUUUGACAAACACUGCGCUCGUUUGUUUGUUUGUUUGGCACGCUCGUACA .......(((((((((.......-))).....((((.(((((((.....))))))).........((((....((((((((..((....)).)))))))).)))).))))))))))... ( -34.10) >consensus _UUUCAAGCGAGUGCCCACUGUG_ACCAAACAGUGCGUGCUGGCGAAUGGUUAGCAAUGGGAUGAAAACUUUCGACAAACACUGUGCUCGUUUGUUUGUUUGUUUGGCACACUCGUACA .......(((((((..((((((.......))))))..(((((((.....))))))).........((((....((((((((...........)))))))).))))....)))))))... (-30.10 = -30.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:21 2006