Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,536,980 – 7,537,086 |
Length | 106 |
Max. P | 0.887470 |
Location | 7,536,980 – 7,537,086 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 81.69 |
Mean single sequence MFE | -22.01 |
Consensus MFE | -15.56 |
Energy contribution | -16.36 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.71 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887470 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7536980 106 - 22224390 UUCUGCCUCUUCUUG------UUCUCUUUUCCUCUCCG--CC-----CUGUCUCUUUGCCCCUUCUUUUUCCAUACGUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG ...............------..........((..((.--.(-----(((.....((((((.((............(((((((....))))))))).))))))....))))..))..)) ( -21.80) >DroSec_CAF1 30139 107 - 1 UUCUGCCUCUCCUCG------UUCUCUUUCCCGCCCCG--CCC----CUGUCUCUUUGCCCUUCCUUUUGCCAUACGUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG ...............------..............((.--..(----(((.....((((((........(.....)(((((((....)))))))...))))))....))))..)).... ( -21.70) >DroSim_CAF1 30488 107 - 1 UUCUGCCUCUCCUCG------UUCUCUUUCCCGCCCCG--CCC----CUGUCUCUUUGCCCUUCCUUUUGCCAUACGUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG ...............------..............((.--..(----(((.....((((((........(.....)(((((((....)))))))...))))))....))))..)).... ( -21.70) >DroEre_CAF1 40731 99 - 1 CUCUGCCUCU-----------UUCUCU---CCCCUCCCUGUCUCGCGUUGCC------CCCUCCCUCUUGCCAUACCUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG ..........-----------....((---..(((.((((......((((((------(.....(....).......((((((....))))))....)))))))...)))).)))..)) ( -19.70) >DroYak_CAF1 30817 119 - 1 UUCUGCCUCUCCUCGUUCUCGUUCUCUUUCCCUCCCCCUUCCCCUCGUUGUCUCUUUGCCUUCCCUCUUGGCAUACGUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG .(((((((.........((((((.................................((((.........))))...(((((((....)))))))))))))........))))))).... ( -25.13) >consensus UUCUGCCUCUCCUCG______UUCUCUUUCCCGCCCCG__CCC____CUGUCUCUUUGCCCUUCCUUUUGCCAUACGUUUUGCACAUGCAAAACAAUGGGUAAUAAUCAGGUAGGUUAG .(((((((.........................................((......))........(((((....(((((((....)))))))....))))).....))))))).... (-15.56 = -16.36 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:14 2006