| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,517,227 – 7,517,339 |
| Length | 112 |
| Max. P | 0.574604 |
| Location | 7,517,227 – 7,517,339 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 82.80 |
| Mean single sequence MFE | -44.77 |
| Consensus MFE | -31.30 |
| Energy contribution | -31.42 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574604 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7517227 112 - 22224390 GUUGUUGAACAUAUCGAACUGUUGCUGGGUGAUCGGUGGCAGAACCGCCUUGGUGGGUCGCUGUGGCGUACUGUGGUGCGGCGUCACCGGUGGUUGGGUAAUCAGCGAAUUG .(((((((...((((...((((..((((....))))..))))(((((((..(((((..(((((((.((.....)).))))))))))))))))))).)))).))))))).... ( -46.40) >DroVir_CAF1 110044 112 - 1 AUUGUUGAACAUAUCGAACUGCUGCUGGGUAAUGGGUGGCAGCACCGCCUUUGUGGGCCGCUGUGGCUGUGCAUGAUGCGGCGUAACCGGCGGCUGUGUGAUCAGCGAAUUG .(((((((.(((((......((((((((.....((((((.....))))))...((.(((((.(((......)))...))))).)).)))))))).))))).))))))).... ( -45.00) >DroGri_CAF1 106525 112 - 1 AUUGUUGAACAUAUCGAACUGUUGCUGGGUGAUUGGUGGCAGCACCGCCUUCGUUGGCCGCUGCGGCUGCGAAUGAUGCGGCGUCACAGGCGGCUGUGUAAUCAGGGAAUUG .((.((((((((((((..(((((((((.((.(((.(..((.((((.(((......))).).))).))..).))).)).)))))..)))).))).)))))..)))).)).... ( -41.00) >DroWil_CAF1 27995 112 - 1 AUUGUUGAACAUAUCGAAUUGCUGUUGGGUUAUGGGCGGCAGCACCGCCUUGGUGGGUCGUUGGGGUUGACUGUGAUGCGGUGUGACCGGCGGUUGGGUGAUCAACGAGUUC .(((((((.(((((((.((..(.((..(.((...((((((..((((.....)))).)))))).)).)..)).)..)).)))))))(((........)))..))))))).... ( -38.60) >DroAna_CAF1 21941 112 - 1 GUUGUUGAACAUGUCGAACUGCUGCUGGGUGAUCGGCGGCAGGACCGCCUUGGUCGGCCGCUGGGGCGUGCUGUGGUGGGGCGUCACCGGGGGCUGGGUGAUCAGGGAGUUG ....((((.....)))).((((((((((....))))))))))(((..((((((((((((.(((((((((.((.....)).))))).)))).))))....)))))))).))). ( -52.60) >DroPer_CAF1 72551 112 - 1 GUUGUUGAACAUGUCGAACUGCUGCUGGGUGAUGGGCGGUAGCACCGCCUUGGUGGGGCGUUGCGGAGUGCUGUGGUGCGGCGUAACCGGCGGCUGAGUGAUCAGCGAAUUG .(((((((.(((.(((....((((((((...((((((((.....)))))........(((..((((....))))..)))..)))..)))))))))))))).))))))).... ( -45.00) >consensus AUUGUUGAACAUAUCGAACUGCUGCUGGGUGAUGGGCGGCAGCACCGCCUUGGUGGGCCGCUGCGGCGGACUGUGAUGCGGCGUCACCGGCGGCUGGGUGAUCAGCGAAUUG .(((((((.(((......((((((((........))))))))..(((((..(((....(((((((.(.......).)))))))..))))))))....))).))))))).... (-31.30 = -31.42 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:44:06 2006