| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 947,942 – 948,049 |
| Length | 107 |
| Max. P | 0.777181 |
| Location | 947,942 – 948,049 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 89.94 |
| Mean single sequence MFE | -39.33 |
| Consensus MFE | -28.62 |
| Energy contribution | -27.63 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.777181 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 947942 107 + 22224390 GCGCGUGUUCCCAGCCAGAUACAUUCAUGUAUGUAUGCACAUGUACAUAUGUACAAGUAUGUGGUCCGAAAGGGUAUACCACAUGCCCGGGACAUCGACCCGUUGCC (((((.((((((.((...((((((......))))))))...(((((....))))).(((((((((((....))....)))))))))..)))).....)).)).))). ( -35.10) >DroSec_CAF1 30853 104 + 1 GCGCGUGUUCCCAGCCAGAUACAUUCAUAUGUGUAUGAACAUAU--CUAUGUGCAAGUGUGUGAUCCGAAAGGGUAUAC-ACAUGCCGGGGACAUCGGCUCGUUGAC ((.(((((((((....(((((..((((((....))))))..)))--))..(.(((.((((((.((((....))))))))-)).))))))))))).))))........ ( -41.70) >DroSim_CAF1 28086 104 + 1 GCGCGUGUUCCCAGCCAGAUACAUUCGUAUAUGUAUGCACAUAU--CUAUGUGCAAGUGUGUGGUCCGAAAGGGUAUAC-ACAUGCCGGGGACAUCGGCUCGUUGCC ((.(((((((((.((...((((((......))))))((((((..--..))))))..(((((((..((....))...)))-)))))).))))))).))))........ ( -41.20) >consensus GCGCGUGUUCCCAGCCAGAUACAUUCAUAUAUGUAUGCACAUAU__CUAUGUGCAAGUGUGUGGUCCGAAAGGGUAUAC_ACAUGCCGGGGACAUCGGCUCGUUGCC .((.((((((((.....(.(((((....((((((....))))))....))))))..((((((.((((....)))).....)))))).)))))))))).......... (-28.62 = -27.63 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:43 2006