Locus 2806

Sequence ID X_DroMel_CAF1
Location 7,488,666 – 7,488,784
Length 118
Max. P 0.993225
window4601

overview

Window 1

Location 7,488,666 – 7,488,784
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.97
Mean single sequence MFE -32.04
Consensus MFE -27.90
Energy contribution -28.30
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.16
Structure conservation index 0.87
SVM decision value 2.38
SVM RNA-class probability 0.993225
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7488666 118 + 22224390
CCUUUGAAGUGGCAACCGGCAAAAUAUUAAAUGAAACCCAAAAAU-AAAAGGGGAGCA-UGGGGCACGCUAAAAGGGUGCUCAAUACGAAAAGCCUUGCCUUGCCAUAAGCUGACCACAC
........(((((((..(((((........(((...(((......-....)))...))-).((((((.(.....).)))))).............))))))))))))............. ( -32.20)
>DroSec_CAF1 21695 118 + 1
CCUUUGAAGUGGCAACCGGCAAAAUAUUAAAUGAAACCCAAAAAU-AAAAGGGGAGCA-UGGGGCACGCUAAAAGGGUGCUCAAUACGAAAAGCCUUGCCUUGCCAUAAGCUGACCACAC
........(((((((..(((((........(((...(((......-....)))...))-).((((((.(.....).)))))).............))))))))))))............. ( -32.20)
>DroSim_CAF1 23687 118 + 1
CCUUUGAAGUGGCAACCGGCAAAAUAUUAAAUGAAACCCAAAAAU-AAAAGGGGAGCA-UGGGGCACGCUAAAAGGGUGCUCAAUACGAAAAGCCUUGCCUUGCCAUAAGCUGACCACAC
........(((((((..(((((........(((...(((......-....)))...))-).((((((.(.....).)))))).............))))))))))))............. ( -32.20)
>DroEre_CAF1 22727 118 + 1
CCUUUGAAGUGGCAACCGGCAAAAUAUUAAAUGAAACCCAAAAAAUAAAAGCGGAGC--GGGGGCACGCUAAAAGGGUGCUCAAUACGAAAAGCCUUGCCCUGCCAUAAGCUGACCACAC
........((((....((((...........((.....))..........((((.((--((((((((.(.....).))))((.....))....)))))).)))).....)))).)))).. ( -29.60)
>DroYak_CAF1 25366 120 + 1
CCUUUGAAGUGGCAACCGGCAAAAUAUUAAAUGAAACCCAAAAAUAAAGGGGGCAGCUGGGGGGCACGCUAAAAGGGUGCUCAAUACGAAAAGCCUUGCCUUGCCAUAAGCUGACCACAC
........(((((((..(((((..............(((.........)))(((..(((..((((((.(.....).))))))..)).)....)))))))))))))))............. ( -34.00)
>consensus
CCUUUGAAGUGGCAACCGGCAAAAUAUUAAAUGAAACCCAAAAAU_AAAAGGGGAGCA_UGGGGCACGCUAAAAGGGUGCUCAAUACGAAAAGCCUUGCCUUGCCAUAAGCUGACCACAC
........(((((((..(((((..............(((...........)))........((((((.(.....).)))))).............))))))))))))............. (-27.90 = -28.30 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:55 2006