Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,487,343 – 7,487,452 |
Length | 109 |
Max. P | 0.998663 |
Location | 7,487,343 – 7,487,452 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.60 |
Mean single sequence MFE | -24.84 |
Consensus MFE | -21.74 |
Energy contribution | -22.18 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -2.68 |
Structure conservation index | 0.88 |
SVM decision value | 3.18 |
SVM RNA-class probability | 0.998663 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7487343 109 + 22224390 AAUUU-UCGCUCUCAUUAGACAGGCACA----------CACAUAUCUAUAUUUAACCCCUUGUAGCCAUCUUCUACUUUUCUGAAGCUUUAUCUUUGGCUUGUGCUGUUUAAUGUGUGUG .....-.(((.(.((((((((((.(((.----------.......................((((.......)))).......(((((........)))))))))))))))))).).))) ( -25.00) >DroSec_CAF1 20370 109 + 1 AAUUU-UCGCUCUCAUUAGACAGGCACA----------CACAUAUCUAUAUUUAACCCCUUGUAGCCAUCUUCUACUUUUCUGAAGCUUUAUCUUUGGCUUGUGCUGUUUAAUGUGUGUG .....-.(((.(.((((((((((.(((.----------.......................((((.......)))).......(((((........)))))))))))))))))).).))) ( -25.00) >DroSim_CAF1 22368 109 + 1 AAUUU-UCGCUCUCAUUAGACAGGCACA----------CACAUAUCUAUAUUUAACCCCUUGUAGCCAUCUUCUACUUUUCUGAAGCUUUAUCUUUGGCUUGUGCUGUUUAAUGUGUGUG .....-.(((.(.((((((((((.(((.----------.......................((((.......)))).......(((((........)))))))))))))))))).).))) ( -25.00) >DroEre_CAF1 21386 109 + 1 AAUUUUCCGCUCUCAUUAGACAGGCAC-----------CACAUAUCUAUAUUUAACCCCUUGUAGCCUUCUGCCACUCGCAUAAAGCUUUAUCUUUGGCUUGUGCUGUUUAAUGUGUGUG .......(((.(.(((((((((((((.-----------.......(((((..........))))).....))))....((((((.(((........)))))))))))))))))).).))) ( -27.62) >DroYak_CAF1 23950 109 + 1 AAUUUUUCGCUCUCAUUAGACAGGCACACACACACACACACAUAUCUAUGCUUAACCCCUUGUAGCCAUCUUCU-----------GCUUUAUCUUAGGCUUGUGCUGCUUAAUGUGUGUG ........(((.((....))..))).......(((((((((((....)))...........(((((((......-----------((((......)))).)).)))))....)))))))) ( -21.60) >consensus AAUUU_UCGCUCUCAUUAGACAGGCACA__________CACAUAUCUAUAUUUAACCCCUUGUAGCCAUCUUCUACUUUUCUGAAGCUUUAUCUUUGGCUUGUGCUGUUUAAUGUGUGUG .......(((.(.((((((((((.(((..................(((((..........)))))..................(((((........)))))))))))))))))).).))) (-21.74 = -22.18 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:47 2006