Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,487,193 – 7,487,303 |
Length | 110 |
Max. P | 0.562662 |
Location | 7,487,193 – 7,487,303 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -20.83 |
Consensus MFE | -19.83 |
Energy contribution | -20.17 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.95 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562662 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7487193 110 - 22224390 AAAAACACGGAAAUGGAGGUUAAGCUCUUGCUUUGACAGCCACAAAUGCUAAAAUAAGGAUAUAUAUACUUGAAAACUGGAGCACAUACAUAACAUGUGUUCAUACAUAU .......(((...(((..(((((((....)).)))))..)))............((((..........))))....)))((((((((.......))))))))........ ( -21.80) >DroSec_CAF1 20223 107 - 1 AAAAACACGGAAAUGGAGGUUAAGCUCUUGCUUUGACAGCCACAAAUGCUAAAAUAAGGAUAUAUAUACUUGAAAACUGGAGCACAUACAU---AUGCGUUCAUAUAUAU .......(((...(((..(((((((....)).)))))..)))............((((..........))))....)))((((.(((....---))).))))........ ( -18.40) >DroSim_CAF1 22221 107 - 1 AAAAACACGGAAAUGGAGGUUAAGCUCUUGCUUUGACAGCCACAAAUGCUAAAAUAAGGAUAUAUAUACUUGAAAACUGGAGCACAUACAU---AUGUGUUCAUACAUAU .......(((...(((..(((((((....)).)))))..)))............((((..........))))....)))((((((((....---))))))))........ ( -22.30) >consensus AAAAACACGGAAAUGGAGGUUAAGCUCUUGCUUUGACAGCCACAAAUGCUAAAAUAAGGAUAUAUAUACUUGAAAACUGGAGCACAUACAU___AUGUGUUCAUACAUAU .......(((...(((..(((((((....)).)))))..)))............((((..........))))....)))((((((((.......))))))))........ (-19.83 = -20.17 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:46 2006