Locus 2798

Sequence ID X_DroMel_CAF1
Location 7,484,199 – 7,484,315
Length 116
Max. P 0.550737
window4583

overview

Window 3

Location 7,484,199 – 7,484,315
Length 116
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.13
Mean single sequence MFE -28.84
Consensus MFE -26.56
Energy contribution -26.56
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.92
SVM decision value 0.03
SVM RNA-class probability 0.550737
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7484199 116 + 22224390
--AAACUAUAAAAUGUUGUCGAUUUUGAUUAGGCAAAACUUGACAGGCAACUUUUGGGCUUCGCU--CCAUCGUUGUUGGCGUGGCUUUUCAUUAAAAAUGCCAACUGAGUUUUGUCUUC
--......((((((.......))))))...((((((((((((((((....))..(((((...)).--)))..)))((((((((...............)))))))).))))))))))).. ( -28.16)
>DroSec_CAF1 17267 116 + 1
--AAACUAUAAAAUGUUGUCGAUUUUGAUUAGGCAAAACUUGACAGGCAACUUUUGGGCUUCGCU--CCAUCGUUGUUGGCGUGGCUUUUCAUUAAAAAUGCCAACUGAGUUUUGUCUUC
--......((((((.......))))))...((((((((((((((((....))..(((((...)).--)))..)))((((((((...............)))))))).))))))))))).. ( -28.16)
>DroSim_CAF1 18952 116 + 1
--AAACUAUAAAAUGUUGUCGAUUUUGAUUAGGCAAAACUUGACAGGCAACUUUUGGGCUUCGCU--CCAUCGUUGUUGGCGUGGCUUUUCAUUAAAAAUGCCAACUGAGUUUUGUCUUC
--......((((((.......))))))...((((((((((((((((....))..(((((...)).--)))..)))((((((((...............)))))))).))))))))))).. ( -28.16)
>DroEre_CAF1 18267 118 + 1
--AAACUAUAAAAUGUUGUCGAUUUUGAUUAGGCAAAACUUGACAGGCAACUUUUGGGCUUCGCUCUCCAUCGUUGUUGGCGUGGCUUUUCAUUAAAAAUGCCAACUGAGUUUUGUCUUC
--......((((((.......))))))...((((((((((((((((....))...((((...))))......)))((((((((...............)))))))).))))))))))).. ( -27.76)
>DroYak_CAF1 20685 119 + 1
CGAAACUAUAAAAUGUUGUCGAUUUUGAUUAGGCAAAACUUGACAGGCAACUUUUGGGCUUCGCUC-CCAACGUUGUUGGCGUGGCUUUUCAUUAAAAAUGCCAACUGAGUUUUGUCUUC
((((((........))).))).........((((((((((((((((....)).(((((.......)-)))).)))((((((((...............)))))))).))))))))))).. ( -31.96)
>consensus
__AAACUAUAAAAUGUUGUCGAUUUUGAUUAGGCAAAACUUGACAGGCAACUUUUGGGCUUCGCU__CCAUCGUUGUUGGCGUGGCUUUUCAUUAAAAAUGCCAACUGAGUUUUGUCUUC
........((((((.......))))))...((((((((((((...((((..(((.(((((.((((...((....))..)))).)))))......)))..))))...)))))))))))).. (-26.56 = -26.56 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:39 2006