Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,483,687 – 7,483,833 |
Length | 146 |
Max. P | 0.999312 |
Location | 7,483,687 – 7,483,794 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.41 |
Mean single sequence MFE | -26.42 |
Consensus MFE | -26.26 |
Energy contribution | -26.30 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -2.02 |
Structure conservation index | 0.99 |
SVM decision value | 3.50 |
SVM RNA-class probability | 0.999312 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7483687 107 + 22224390 -------------ACAGCCCAUCGAAAUUUAACCCACUAAGCUCCGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUUCAUUUUGCCAGCAACAAAA -------------................................((((((((....((((((((.(((..(.....)...((......))))).))))))))..))))))))....... ( -27.50) >DroSec_CAF1 16769 107 + 1 -------------ACAGUCCAUCGAAAUUUAACCCACUAAGCUCCGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUUCAUUUUGCCAGCAACAAAA -------------................................((((((((....((((((((.(((..(.....)...((......))))).))))))))..))))))))....... ( -27.50) >DroSim_CAF1 18451 107 + 1 -------------ACAGCCCAUCGAAAUUUAACCCACUAAGCUCCGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUUCAUUUUGCCAGCAACAAAA -------------................................((((((((....((((((((.(((..(.....)...((......))))).))))))))..))))))))....... ( -27.50) >DroEre_CAF1 17782 119 + 1 ACACCCGCACG-ACCCAGCCAUCGAAAUUUAACCCACUAAGCUCUGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUUCAUUUUGCCAGCAACAAAA .........((-(........)))....................(((((((((....((((((((.(((..(.....)...((......))))).))))))))..)))))))))...... ( -28.90) >DroYak_CAF1 20098 120 + 1 CCACCCGCCCGCAACAACCCAUCGAAAUUUAACCCACUAAGCUCCGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUCCAUUUUGCCAGUAACAAAA .............................................((((((((....((.(((((.(((..(.....)...((......))))).))))).))..))))))))....... ( -20.70) >consensus _____________ACAGCCCAUCGAAAUUUAACCCACUAAGCUCCGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUUCAUUUUGCCAGCAACAAAA .............................................((((((((....((((((((.(((..(.....)...((......))))).))))))))..))))))))....... (-26.26 = -26.30 + 0.04)
Location | 7,483,714 – 7,483,833 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.04 |
Mean single sequence MFE | -27.38 |
Consensus MFE | -26.26 |
Energy contribution | -26.30 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.05 |
Mean z-score | -1.44 |
Structure conservation index | 0.96 |
SVM decision value | 1.52 |
SVM RNA-class probability | 0.960853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7483714 119 + 22224390 GCUCCGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUUCAUUUUGCCAGCAACAAAACUGUCGUCCUUUUCCCGAUUU-CCCGCCUUGAUUUUCUCC ((...((((((((....((((((((.(((..(.....)...((......))))).))))))))..)))))))).........((((.........))))..-...))............. ( -29.20) >DroSec_CAF1 16796 119 + 1 GCUCCGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUUCAUUUUGCCAGCAACAAAACUGUCGUCCUUUUCCCGAUUU-CCCGCCUUGAUUUUCUCC ((...((((((((....((((((((.(((..(.....)...((......))))).))))))))..)))))))).........((((.........))))..-...))............. ( -29.20) >DroSim_CAF1 18478 119 + 1 GCUCCGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUUCAUUUUGCCAGCAACAAAACUGUCGUCCUUUUCCCGAUUU-CCCGCCUUGAUUUUCUCC ((...((((((((....((((((((.(((..(.....)...((......))))).))))))))..)))))))).........((((.........))))..-...))............. ( -29.20) >DroEre_CAF1 17821 101 + 1 GCUCUGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUUCAUUUUGCCAGCAACAAAACUGUCGUCCUUUUCCCAAUUU------------------- ....(((((((((....((((((((.(((..(.....)...((......))))).))))))))..)))))))))...........................------------------- ( -28.00) >DroYak_CAF1 20138 120 + 1 GCUCCGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUCCAUUUUGCCAGUAACAAAACUGUCGUCCUUUUCCCGAUUUUCCCCCCUUGAUUUUCUCC .....((((((((....((.(((((.(((..(.....)...((......))))).))))).))..)))))))).........((((.........))))..................... ( -21.30) >consensus GCUCCGCUGGCAGCACUUGAAACAAAAGCAACUCUUUGGCAGCUGACACGCGCUGUUGUUUCAUUUUGCCAGCAACAAAACUGUCGUCCUUUUCCCGAUUU_CCCGCCUUGAUUUUCUCC .....((((((((....((((((((.(((..(.....)...((......))))).))))))))..))))))))............................................... (-26.26 = -26.30 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:38 2006