Locus 2794

Sequence ID X_DroMel_CAF1
Location 7,481,121 – 7,481,221
Length 100
Max. P 0.793879
window4578

overview

Window 8

Location 7,481,121 – 7,481,221
Length 100
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 75.30
Mean single sequence MFE -34.72
Consensus MFE -15.65
Energy contribution -18.13
Covariance contribution 2.48
Combinations/Pair 1.12
Mean z-score -1.94
Structure conservation index 0.45
SVM decision value 0.60
SVM RNA-class probability 0.793879
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7481121 100 + 22224390
GAAGGAGCAGUAGAAGUAGUAAGGGACAUUAGGG--------GGGGGCAUCAAAAGGAGUGCGAUGUCUCGUCUCUUUUUCCCUUCAUAUCCCC------------AUCUCUUUCGGCAA
(((((((..(..((.((.(.((((((....((((--------(((((((((...........)))))))).)))))...))))))))).))..)------------..)))))))..... ( -31.60)
>DroSec_CAF1 14245 98 + 1
GAAGGAGCAGUAGAAGUAGAAAGGGACAUUAGGG----------GGGCAUCAAAAGGAGUGCGAUGUCUCGUCUCUUUUUCCCUUCAUAUCCCC------------AUCUCUUUCGGCAA
......((....((((.(((..((((.((..(((----------(((....((((((((.((((....)))))))))))))))))))).)))).------------.))).)))).)).. ( -30.30)
>DroSim_CAF1 14726 98 + 1
GAAGGAGCAGUAGAAGUAGAAAGGGACAUUAGGG----------GGGCAUCAAAAGGAGUGCGAUGUCUCGUCUCUUUUUCCCUUCAUAUCCCC------------AUCUCUUUCGGCAA
......((....((((.(((..((((.((..(((----------(((....((((((((.((((....)))))))))))))))))))).)))).------------.))).)))).)).. ( -30.30)
>DroEre_CAF1 15237 81 + 1
AGAC-----GACGAAGGAGCAGGGG----------------------AAUCAAAAGGAGUGCGAUGUCCCGUCUCUUUUUCACCUCAUAGCCCC------------CUCUCUUUCGGCGA
...(-----(.((((((((.(((((----------------------....((((((((.(((......)))))))))))...(.....).)))------------)))))))))).)). ( -29.20)
>DroYak_CAF1 17384 115 + 1
GAAC-----GCCGAAGUAGAAGGGGGCAUUAGGGGCGAGGGGGGUGGCAUCAAAAGGAGUGCGAUGUCUCGUCUCUUUUUCCCCCCAUAUCCCCGUCCCUCUCUCGCUCUCGCUCGGCAA
....-----(((((.(((((.(((((....(((((((.(((..((((....((((((((.((((....))))))))))))....))))..)))))))))))))))..))).))))))).. ( -52.20)
>consensus
GAAGGAGCAGUAGAAGUAGAAAGGGACAUUAGGG__________GGGCAUCAAAAGGAGUGCGAUGUCUCGUCUCUUUUUCCCUUCAUAUCCCC____________AUCUCUUUCGGCAA
(((((((...............((((....((((.................((((((((.(((......))))))))))))))).....))))...............)))))))..... (-15.65 = -18.13 +   2.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:34 2006