Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,475,692 – 7,475,790 |
Length | 98 |
Max. P | 0.668115 |
Location | 7,475,692 – 7,475,790 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 93.94 |
Mean single sequence MFE | -18.44 |
Consensus MFE | -16.68 |
Energy contribution | -16.35 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.16 |
Mean z-score | -1.85 |
Structure conservation index | 0.90 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.668115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7475692 98 + 22224390 CAGGAUUUGCU-GAUGCUGAGGCUUCCUUUUACCUCCAUUUUUCGCCCCCUCCCCAUUUCCAUUCGCAUUUCCACUGCCAUUCGAGUUUCAGCUGGCUC ..(((..(((.-((((..((((..........))))........(....)..........)))).)))..)))...((((...(.....)...)))).. ( -15.60) >DroSec_CAF1 8934 99 + 1 CAGGAUUUGCUGGAUGCUGAGGCUUCCUUCCACCUCCAUUUUCCACCCCCUCCCCAUUUCCAUUCGCAUUUCCACUGCCAUUCGAGCUUCAGCUGGCUC ..(((..(((((((((..((((..........................))))..))..))))...)))..)))..........(((((......))))) ( -20.37) >DroEre_CAF1 9629 99 + 1 CAGGAUUUGCUGGAUACUGAGGCUUCCUUCCACCUCCAUUUUCCACCUCCUCCCCAUUUCCCUUCGCAUUUCCACUGCCAUUCGAGCUUCAGCUGGCUC ..(((..(((((((....((((..........)))).....))))....................)))..)))..........(((((......))))) ( -19.35) >consensus CAGGAUUUGCUGGAUGCUGAGGCUUCCUUCCACCUCCAUUUUCCACCCCCUCCCCAUUUCCAUUCGCAUUUCCACUGCCAUUCGAGCUUCAGCUGGCUC ..(((..(((((((....((((..........)))).....))))....................)))..)))..........(((((......))))) (-16.68 = -16.35 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:14 2006