Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,475,002 – 7,475,110 |
Length | 108 |
Max. P | 0.963431 |
Location | 7,475,002 – 7,475,110 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -20.30 |
Consensus MFE | -20.30 |
Energy contribution | -20.30 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.84 |
Structure conservation index | 1.00 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7475002 108 - 22224390 -CCCC----CCUCAACGCUGGUUGGGCGCCUUUGAAACUUGGGAACUUGUCAACCCAAACC-CCCGAAAAGCCAAUCCCCACCCCAAUUCAAUGCCCCAAAACGCACGAAAAAA------ -....----.......((...(((((.((..(((((..(((((...(((......)))...-...((........)).....)))))))))).)))))))...)).........------ ( -20.30) >DroSec_CAF1 8250 108 - 1 -CCCC----CCUCAACGCUGGUUGGGCGCCUUUGAAACUUGGGAACUUGUCAACCCAAACC-CCCGAAAAGCCAAUCCCCACCCCAAUUCAAUGCCCCAAAACGCACGAAAAAA------ -....----.......((...(((((.((..(((((..(((((...(((......)))...-...((........)).....)))))))))).)))))))...)).........------ ( -20.30) >DroEre_CAF1 8879 109 - 1 AACCC----CCUCAACGCUGGUUGGGCGCCUUUGAAACUUGGGAACUUGUCAACCCAAACC-CCCGAAAAGCCAAUCCCCACCCCAAUUCAAUGCCCCAAAACGCACGAAAAAA------ .....----.......((...(((((.((..(((((..(((((...(((......)))...-...((........)).....)))))))))).)))))))...)).........------ ( -20.30) >DroYak_CAF1 12054 120 - 1 AACCCCCCCCCUUAACGCUGGUUGGGCGCCUUUGAAACUUGGGAACUUGUCAACCCAAACCCCCCGAAAAGCCAAUCCCCACCCCAAUUCAAUGCCCCAAAACGCACAAGAAAAAAAAAA ................((...(((((.((..(((((..(((((...(((......))).......((........)).....)))))))))).)))))))...))............... ( -20.30) >consensus _ACCC____CCUCAACGCUGGUUGGGCGCCUUUGAAACUUGGGAACUUGUCAACCCAAACC_CCCGAAAAGCCAAUCCCCACCCCAAUUCAAUGCCCCAAAACGCACGAAAAAA______ ................((...(((((.((..(((((..(((((...(((......))).......((........)).....)))))))))).)))))))...))............... (-20.30 = -20.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:13 2006