Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,471,354 – 7,471,493 |
Length | 139 |
Max. P | 0.965785 |
Location | 7,471,354 – 7,471,453 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 90.94 |
Mean single sequence MFE | -12.43 |
Consensus MFE | -12.20 |
Energy contribution | -12.20 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.07 |
Structure conservation index | 0.98 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.965785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7471354 99 + 22224390 UUUAGCAACAACAACGAUAAAUCGACACCCAACUAACAACAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAUGGCCAACUAUAAAGGACAAAC ....((........(((....))).((((..(((..........)))))))...(((((((((....)))))))))...)).................. ( -12.90) >DroSec_CAF1 4613 89 + 1 UUUAACAACAACAACGAUAAAUCGAAACCCAACUAACAACAACAAGUGGUGAACACAUAUGUACCUAUAUAUAUGUAUGGCCAA----------CAAAC ..............(((....)))......................((((.(..(((((((((....))))))))).).)))).----------..... ( -12.20) >DroSim_CAF1 6332 89 + 1 UUUAACAACAACAACGAUAAAUCGACACCCAACUAACAACAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAUGGCCAA----------CAAAC ..............(((....)))......................((((.(..(((((((((....))))))))).).)))).----------..... ( -12.20) >consensus UUUAACAACAACAACGAUAAAUCGACACCCAACUAACAACAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAUGGCCAA__________CAAAC ..............(((....)))......................((((.(..(((((((((....))))))))).).))))................ (-12.20 = -12.20 + 0.00)
Location | 7,471,393 – 7,471,493 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 82.59 |
Mean single sequence MFE | -20.85 |
Consensus MFE | -15.14 |
Energy contribution | -15.20 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -2.33 |
Structure conservation index | 0.73 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958424 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7471393 100 + 22224390 CAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAU------------GGCCAACUAUAAAGGACAAACGAAGCGAGUCCCUUCUCAUUUUUUACUAGUCCCCUCAAAA .....((((((.(..(((((((((....))))))))).)------------.))).))).....((((....((((.(((......))).))))......))))........ ( -18.60) >DroSec_CAF1 4652 90 + 1 CAACAAGUGGUGAACACAUAUGUACCUAUAUAUAUGUAU------------GGCCAA----------CAAACGGAGCGAGUCCUUUCUCAUUUUUUACUUGUCCCCUCAAAU ..(((((((((.(..(((((((((....))))))))).)------------.)))..----------..........(((......))).......)))))).......... ( -18.00) >DroSim_CAF1 6371 90 + 1 CAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAU------------GGCCAA----------CAAACGAAACGAGUCCUUUCUCAUUUUUUACUUGUCCCCUCAAAU ..(((((((((.(..(((((((((....))))))))).)------------.)))..----------..........(((......))).......)))))).......... ( -18.00) >DroYak_CAF1 7105 112 + 1 CAACAAGUGGUGAACACAUAUGUACUCAUAUGUAUGUAUGUUUGUAUAUACGUUCAACUAUAAAGGACAAACGAAGCGAGUCCUUUCUCAUUUUUUACUUGUCCCCUCAACU ..((((((((((((((((((((....)))))))..((((((....))))))))))).....(((((((...........)))))))........)))))))).......... ( -28.80) >consensus CAACAAGUGGUGAACACAUAUGUACUUAUAUAUAUGUAU____________GGCCAA__________CAAACGAAGCGAGUCCUUUCUCAUUUUUUACUUGUCCCCUCAAAU ..((((((((.(((.(((((((((....)))))))))........................................(((......))).))).)))))))).......... (-15.14 = -15.20 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:11 2006