Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,470,309 – 7,470,417 |
Length | 108 |
Max. P | 0.653961 |
Location | 7,470,309 – 7,470,417 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 92.48 |
Mean single sequence MFE | -26.65 |
Consensus MFE | -24.06 |
Energy contribution | -23.88 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.03 |
Mean z-score | -1.45 |
Structure conservation index | 0.90 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653961 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7470309 108 + 22224390 UUCGGUCUGGAGGUGGAUAUAAAAA---AAAAAGAUGUAGGGAGCGCAUAAAAAUUGGCAGCAGUUUGGGGCAGACAGCAUCGCAGACAAGUAAACUUUUUAUGCCAUC------AC ...........(((((.((((((((---.....(((((.(...((.(....((((((....)))))).).))...).)))))((......))....)))))))))))))------.. ( -23.80) >DroSec_CAF1 3575 109 + 1 UUCGGUCUGGAGGUGGAUAUAAAAA--AAAAAAGAUGUAGGGAGCGCAUAAAAAUUGGCAGCAGUUUGGGGCAGACAGCAUCGCAGACAAGUAAACUUUUUAUGCCACC------AC ...........(((((.((((((((--......(((((.(...((.(....((((((....)))))).).))...).)))))((......))....)))))))))))))------.. ( -26.40) >DroSim_CAF1 5280 109 + 1 UUCGGUCUGGAGGUGGAUAUAAAAA--AAAAAAGAUGUAGGGAGCGCAUAAAAAUUGGCAGCAGUUUGGGGCAGACAGCAUCGCAGACAAGUAAACUUUUUAUGCCACC------AC ...........(((((.((((((((--......(((((.(...((.(....((((((....)))))).).))...).)))))((......))....)))))))))))))------.. ( -26.40) >DroYak_CAF1 5978 110 + 1 -------UGGAGGUGGAUAUAAAAAAAAAAAAAGAUGUAGGGAGCGCAUAAAAAUUGGCAGCAGUUUGGGGCAGACAGCAUCGCAGACAAGUAAACUUUUUAUGCCACCGCCACCAC -------(((.(((((.((((((((........(((((.(...((.(....((((((....)))))).).))...).)))))((......))....))))))))))))).))).... ( -30.00) >consensus UUCGGUCUGGAGGUGGAUAUAAAAA__AAAAAAGAUGUAGGGAGCGCAUAAAAAUUGGCAGCAGUUUGGGGCAGACAGCAUCGCAGACAAGUAAACUUUUUAUGCCACC______AC ...........(((((.((((((((........(((((.(...((.(....((((((....)))))).).))...).)))))((......))....)))))))))))))........ (-24.06 = -23.88 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:43:06 2006