Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 938,492 – 938,622 |
Length | 130 |
Max. P | 0.901898 |
Location | 938,492 – 938,590 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 97.45 |
Mean single sequence MFE | -16.92 |
Consensus MFE | -15.05 |
Energy contribution | -15.80 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.27 |
Structure conservation index | 0.89 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 938492 98 + 22224390 UGUAUCUCGUAAUUCAGCAGCAACAACCGCAAAACAAAUAAAAGCAACCUCGAUGAUAACAAUCAUCGUCAACAGCAACAAAUGCACGCAAUUGUUGU ...................(((((((..((....................(((((((....)))))))......(((.....)))..))..))))))) ( -18.40) >DroSec_CAF1 21568 98 + 1 UGUAUCUCGUAAUUCAGCAGCAACAACCGCAAAACAAAUAAAAGCAACCUCGAUGAUAACAAUCAUCGUCAACAGCAACCAAUGCACGCAAUUGUUGU ...................(((((((..((....................(((((((....)))))))......(((.....)))..))..))))))) ( -18.40) >DroSim_CAF1 17600 98 + 1 UGUAUCUCGUAAUUCAACAGCAACAACCGCAAAACAAAUAAAAGCAACCUCGAUGAUAACAAUCAUCGUCAACAGCAACAAAUGCACGCAAUUGUUGU ...................(((((((..((....................(((((((....)))))))......(((.....)))..))..))))))) ( -18.40) >DroEre_CAF1 29844 98 + 1 UGUAUCUCGUAAUUCAGCAGCAACAACCGCAAAACAAAUAAAAGCAACCUCCACGAUAACAAUCAUCGUCAACAGCAACAAAAGCACGCAAUUGUUGU ...................(((((((..((......................(((((.......))))).....((.......))..))..))))))) ( -12.50) >consensus UGUAUCUCGUAAUUCAGCAGCAACAACCGCAAAACAAAUAAAAGCAACCUCGAUGAUAACAAUCAUCGUCAACAGCAACAAAUGCACGCAAUUGUUGU ...................(((((((..((....................(((((((....)))))))......(((.....)))..))..))))))) (-15.05 = -15.80 + 0.75)
Location | 938,531 – 938,622 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 97.80 |
Mean single sequence MFE | -17.52 |
Consensus MFE | -15.65 |
Energy contribution | -16.40 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -3.40 |
Structure conservation index | 0.89 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 938531 91 + 22224390 AAAAGCAACCUCGAUGAUAACAAUCAUCGUCAACAGCAACAAAUGCACGCAAUUGUUGUCAGUGAUUUAAAAUUUAUAACAAUUAACAGAA ....((.....(((((((....)))))))......(((.....)))..))(((((((((.(((........))).)))))))))....... ( -19.00) >DroSec_CAF1 21607 91 + 1 AAAAGCAACCUCGAUGAUAACAAUCAUCGUCAACAGCAACCAAUGCACGCAAUUGUUGUCAGUGAUUUAAAAUUUAUAACAAUUAACAGAA ....((.....(((((((....)))))))......(((.....)))..))(((((((((.(((........))).)))))))))....... ( -19.00) >DroSim_CAF1 17639 91 + 1 AAAAGCAACCUCGAUGAUAACAAUCAUCGUCAACAGCAACAAAUGCACGCAAUUGUUGUCAGUGAUUUAAAAUUUAUAACAAUUAACAGAA ....((.....(((((((....)))))))......(((.....)))..))(((((((((.(((........))).)))))))))....... ( -19.00) >DroEre_CAF1 29883 91 + 1 AAAAGCAACCUCCACGAUAACAAUCAUCGUCAACAGCAACAAAAGCACGCAAUUGUUGUCAGUGAUUUAAAAUUUAUAACAAUUAACAGAA ....((.......(((((.......))))).....((.......))..))(((((((((.(((........))).)))))))))....... ( -13.10) >consensus AAAAGCAACCUCGAUGAUAACAAUCAUCGUCAACAGCAACAAAUGCACGCAAUUGUUGUCAGUGAUUUAAAAUUUAUAACAAUUAACAGAA ....((.....(((((((....)))))))......(((.....)))..))(((((((((.(((........))).)))))))))....... (-15.65 = -16.40 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:41 2006