Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,468,757 – 7,468,912 |
Length | 155 |
Max. P | 0.947766 |
Location | 7,468,757 – 7,468,877 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.17 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -25.80 |
Energy contribution | -25.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.20 |
Structure conservation index | 0.98 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7468757 120 - 22224390 CACAAAAAUAAAAGUGAGCCACAGAAGCGAAGCCACAUUUAUGGCGAUCGCGCAGCUUAAAACAUCCGGUAGUUAAACAAUCUUACAAUGAGCCUAAGCUCGGCUAAGUUGACUUCAAUU (((..........)))((((......((((.((((......))))..))))(.((((((.....((..((((..........))))...))...))))))))))).(((((....))))) ( -26.20) >DroSec_CAF1 2028 120 - 1 CACAAAAAUAAAAGUGAGCCACAGAAGCGAAGCCACAUUUAUGGCGAUCGCGCAGCUUAAAACAUCCGGUAGUUAAACAAUCUUACAAUGAGCCUAAGCUCGGCUAAGUUGACUUCAAUU (((..........)))((((......((((.((((......))))..))))(.((((((.....((..((((..........))))...))...))))))))))).(((((....))))) ( -26.20) >DroSim_CAF1 3730 120 - 1 CACAAAAAUAAAAGUGAGCCACAGAAGCGAAGCCACAUUUAUGGCGAUCGCGCAGCUUAAAACAUCCGGUAGUUAAACAAUCUUACAAUGAGCCUAAGCUCGGCUAAGUUGACUUCAAUU (((..........)))((((......((((.((((......))))..))))(.((((((.....((..((((..........))))...))...))))))))))).(((((....))))) ( -26.20) >DroEre_CAF1 2304 120 - 1 CACAGAAAUAAAAGUGAGCCACAGAAGCGAAGCCACAUUUAUGGCGAUCGCGCAGCUUAAAACAUCCGGUAGUUAAACAAUCUUACAAUGAGCCUAAGCUCGGCUAAGUUGACUUCAAUU (((..........)))((((......((((.((((......))))..))))(.((((((.....((..((((..........))))...))...))))))))))).(((((....))))) ( -26.20) >DroYak_CAF1 4246 120 - 1 AAUAGAAACAAAAGUGAGCCACAGUAGCGAAGCCACAUUUAUGGCGAUCGCGCAGCUUAAAACAUCCGGUAGUUAAACAAUCUUACAAUGAGCCUAAGCUCGGCUAAGUUGACUUCAAUU ....(((.(((.....((((...(((((((.((((......))))..))))..((((.............)))).........)))...((((....))))))))...)))..))).... ( -26.72) >consensus CACAAAAAUAAAAGUGAGCCACAGAAGCGAAGCCACAUUUAUGGCGAUCGCGCAGCUUAAAACAUCCGGUAGUUAAACAAUCUUACAAUGAGCCUAAGCUCGGCUAAGUUGACUUCAAUU ................((((......((((.((((......))))..))))(.((((((.....((..((((..........))))...))...))))))))))).(((((....))))) (-25.80 = -25.80 + 0.00)
Location | 7,468,797 – 7,468,912 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 95.49 |
Mean single sequence MFE | -30.00 |
Consensus MFE | -27.65 |
Energy contribution | -27.02 |
Covariance contribution | -0.62 |
Combinations/Pair | 1.11 |
Mean z-score | -2.21 |
Structure conservation index | 0.92 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.947766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7468797 115 + 22224390 UUGUUUAACUACCGGAUGUUUUAAGCUGCGCGAUCGCCAUAAAUGUGGCUUCGCUUCUGUGGCUCACUUUUAUUUUUGUGGGCUGUGGCAUGUCUGGAUUUCUUUGAUU-UUUAUA ...........((((((((.....((..(((((..(((((....))))).))))......(((((((..........))))))))..))))))))))............-...... ( -35.30) >DroSec_CAF1 2068 113 + 1 UUGUUUAACUACCGGAUGUUUUAAGCUGCGCGAUCGCCAUAAAUGUGGCUUCGCUUCUGUGGCUCACUUUUAUUUUUGUGGGUU--GGCAUGUCUAGAUUUCUUUGAUU-UGUAUA .............(((...((((..((((((((..(((((....))))).))))......(((((((..........)))))))--.))).)..))))..)))......-...... ( -26.50) >DroSim_CAF1 3770 113 + 1 UUGUUUAACUACCGGAUGUUUUAAGCUGCGCGAUCGCCAUAAAUGUGGCUUCGCUUCUGUGGCUCACUUUUAUUUUUGUGGGUU--GGCAUGUCUGGAUUUCUUUGAUU-UUUAUA ...........((((((((.....(((..((((..(((((....))))).))))......(((((((..........)))))))--)))))))))))............-...... ( -29.20) >DroEre_CAF1 2344 112 + 1 UUGUUUAACUACCGGAUGUUUUAAGCUGCGCGAUCGCCAUAAAUGUGGCUUCGCUUCUGUGGCUCACUUUUAUUUCUGUGGGCU--GGCAUGUCUGAAUUUCUUUGAUUUUUU--A .............(((...((((..((((((((..(((((....))))).))))......(((((((..........)))))))--.))).)..))))..)))..........--. ( -29.00) >consensus UUGUUUAACUACCGGAUGUUUUAAGCUGCGCGAUCGCCAUAAAUGUGGCUUCGCUUCUGUGGCUCACUUUUAUUUUUGUGGGCU__GGCAUGUCUGGAUUUCUUUGAUU_UUUAUA .............(((...((((..((((((((..(((((....))))).))))......(((((((..........)))))))...))).)..))))..)))............. (-27.65 = -27.02 + -0.62)
Location | 7,468,797 – 7,468,912 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 95.49 |
Mean single sequence MFE | -20.45 |
Consensus MFE | -17.92 |
Energy contribution | -17.93 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.71 |
Structure conservation index | 0.88 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658160 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7468797 115 - 22224390 UAUAAA-AAUCAAAGAAAUCCAGACAUGCCACAGCCCACAAAAAUAAAAGUGAGCCACAGAAGCGAAGCCACAUUUAUGGCGAUCGCGCAGCUUAAAACAUCCGGUAGUUAAACAA ......-...............(((.((((...((.(((..........))).)).......((((.((((......))))..))))................)))))))...... ( -21.70) >DroSec_CAF1 2068 113 - 1 UAUACA-AAUCAAAGAAAUCUAGACAUGCC--AACCCACAAAAAUAAAAGUGAGCCACAGAAGCGAAGCCACAUUUAUGGCGAUCGCGCAGCUUAAAACAUCCGGUAGUUAAACAA ......-...............(((.((((--....(((..........)))(((.......((((.((((......))))..))))...)))..........)))))))...... ( -19.20) >DroSim_CAF1 3770 113 - 1 UAUAAA-AAUCAAAGAAAUCCAGACAUGCC--AACCCACAAAAAUAAAAGUGAGCCACAGAAGCGAAGCCACAUUUAUGGCGAUCGCGCAGCUUAAAACAUCCGGUAGUUAAACAA ......-...............(((.((((--....(((..........)))(((.......((((.((((......))))..))))...)))..........)))))))...... ( -19.20) >DroEre_CAF1 2344 112 - 1 U--AAAAAAUCAAAGAAAUUCAGACAUGCC--AGCCCACAGAAAUAAAAGUGAGCCACAGAAGCGAAGCCACAUUUAUGGCGAUCGCGCAGCUUAAAACAUCCGGUAGUUAAACAA .--...................(((.((((--.((.(((..........))).)).......((((.((((......))))..))))................)))))))...... ( -21.70) >consensus UAUAAA_AAUCAAAGAAAUCCAGACAUGCC__AACCCACAAAAAUAAAAGUGAGCCACAGAAGCGAAGCCACAUUUAUGGCGAUCGCGCAGCUUAAAACAUCCGGUAGUUAAACAA ......................(((.((((......(((..........)))(((.......((((.((((......))))..))))...)))..........)))))))...... (-17.92 = -17.93 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:59 2006