Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,468,458 – 7,468,652 |
Length | 194 |
Max. P | 0.981477 |
Location | 7,468,458 – 7,468,578 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.50 |
Mean single sequence MFE | -40.60 |
Consensus MFE | -37.76 |
Energy contribution | -37.80 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.02 |
Mean z-score | -1.44 |
Structure conservation index | 0.93 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820717 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7468458 120 - 22224390 CAAUUGCCCGGGCAGCGAGCAGAAAAAGUGUUGCGUUUAACUGGUAAAUCAGUUCGACUACCGGCUGAGUCCGUAUCUGAGAUAUGAGAUCCACCGCCGGACGUUGGCGGCGGAAAGACA .....(((.((((((((...........))))))(((.((((((....)))))).)))..)))))...(((((((((...))))))...(((.((((((.....)))))).)))..))). ( -40.30) >DroSec_CAF1 1763 120 - 1 CAAUUGCCCGGGCAGCGAGCAGAAAAAGUGUUGCGUUUAACUGGUAAAUAAGUUCGACUACCGGCUGAGUCCGUAUCUGAGAUAUGAGAUUCACCGCCGGACGUUGGCGGCGGAAAGACA ...(((((..(.(((((.((((........))))(((.((((........)))).)))..(((((((((((((((((...)))))).))))))..))))).))))).))))))....... ( -40.70) >DroSim_CAF1 3465 120 - 1 CAAUUGCCCGGGCAGCGAGCAGAAAAAGUGUUGCGUUUAACUGGUAAAUCAGUUCGACUACCGGCUGAGUCCGUAUCUGAGAUAUGAGAUUCACCGCCGGACGUUGGCGGCGGAAAGACA ...(((((..(.(((((.((((........))))(((.((((((....)))))).)))..(((((((((((((((((...)))))).))))))..))))).))))).))))))....... ( -43.20) >DroEre_CAF1 2003 120 - 1 CAAUUGCCCGGGCAGCGAGCAGAAAAAGUGUUGCGUUUAACUGGUAAAUCAGUUCGACUACCGGCUGAGUCCGUAUCUGAGAUAUGAGAUCCACCGCCGGACGUUGGCGGCGGAAAGACA .....(((.((((((((...........))))))(((.((((((....)))))).)))..)))))...(((((((((...))))))...(((.((((((.....)))))).)))..))). ( -40.30) >DroYak_CAF1 3981 120 - 1 CAAUUGCCCGGGCAGCGAGCAGAAAAAGUGUUGCGUUUAACUGGUAAAUCAGUUCGACUACCGGCUGAGUUCGUAUCUGAGAUAUGAGAUCCAACGCCGGACGUUGGCGGCGGAAAGACA ...(((((..(.(((((.((((........))))(((.((((((....)))))).)))..(((((.((.((((((((...)))))))).))....))))).))))).))))))....... ( -38.50) >consensus CAAUUGCCCGGGCAGCGAGCAGAAAAAGUGUUGCGUUUAACUGGUAAAUCAGUUCGACUACCGGCUGAGUCCGUAUCUGAGAUAUGAGAUCCACCGCCGGACGUUGGCGGCGGAAAGACA ...(((((..(.(((((.((((........))))(((.((((((....)))))).)))..(((((((.(((((((((...)))))).))).))..))))).))))).))))))....... (-37.76 = -37.80 + 0.04)
Location | 7,468,538 – 7,468,652 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.18 |
Mean single sequence MFE | -19.92 |
Consensus MFE | -18.50 |
Energy contribution | -18.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.93 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981477 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7468538 114 + 22224390 UUAAACGCAACACUUUUUCUGCUCGCUGCCCGGGCAAUUGAUCAUACUAAUGAUUAUUAUCUGGCCGCCGGACGAGACAAUCCCAAUCCCAUUCC------AUCAUUCCCCAUCCCCCAU ...................(((((((((..(((.((..(((((((....))))))).....)).))).))).)))).))................------................... ( -19.00) >DroSec_CAF1 1843 107 + 1 UUAAACGCAACACUUUUUCUGCUCGCUGCCCGGGCAAUUGAUCAUACUAAUGAUUAUUAUCUGGCCGCCGGACGAGACAAUCCCAAUCCCAUUCC------AUCAUUCCCCAU------- ...................(((((((((..(((.((..(((((((....))))))).....)).))).))).)))).))................------............------- ( -19.00) >DroSim_CAF1 3545 107 + 1 UUAAACGCAACACUUUUUCUGCUCGCUGCCCGGGCAAUUGAUCAUACUAAUGAUUAUUAUCUGGCCGCCGGACGAGACAAUCCCAAUCCCAUUCC------AUCAUUCCCCAU------- ...................(((((((((..(((.((..(((((((....))))))).....)).))).))).)))).))................------............------- ( -19.00) >DroEre_CAF1 2083 113 + 1 UUAAACGCAACACUUUUUCUGCUCGCUGCCCGGGCAAUUGAUCAUACUAAUGAUUAUUAUCUGCCCGCCGGACGAGACAAUCCCAAUCCCAUUCCCCAUCCCCCAUUCCCCAU------- ...................(((((((((..((((((..(((((((....))))))).....)))))).))).)))).))..................................------- ( -23.60) >DroYak_CAF1 4061 106 + 1 UUAAACGCAACACUUUUUCUGCUCGCUGCCCGGGCAAUUGAUCAUACUAAUGAUUAUUAUCUGGCCGCCGGACGAGACAAUCCCAAACCCAUUCCCC--CCAUCAUUU------------ ...................(((((((((..(((.((..(((((((....))))))).....)).))).))).)))).))..................--.........------------ ( -19.00) >consensus UUAAACGCAACACUUUUUCUGCUCGCUGCCCGGGCAAUUGAUCAUACUAAUGAUUAUUAUCUGGCCGCCGGACGAGACAAUCCCAAUCCCAUUCC______AUCAUUCCCCAU_______ ...................(((((((((..(((.((..(((((((....))))))).....)).))).))).)))).))......................................... (-18.50 = -18.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:57 2006