Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,468,319 – 7,468,433 |
Length | 114 |
Max. P | 0.532660 |
Location | 7,468,319 – 7,468,433 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 90.46 |
Mean single sequence MFE | -27.63 |
Consensus MFE | -22.46 |
Energy contribution | -22.28 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -1.42 |
Structure conservation index | 0.81 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532660 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7468319 114 + 22224390 AAUUUAUU-UUGGAGCGACUUCCGUUUGUUCUACAUUGACAUGCCAAAGUCGGACCCGCUCAGUUACUACUGUAGUCAGAGUAGUCAGUAGUCAGUUCAGUCCAUCCAUCCAUCC ........-.((((..(((((..((.((((.......)))).))..)))))((((..(((.....(((((((.............))))))).)))...)))).))))....... ( -25.22) >DroSec_CAF1 1626 112 + 1 AAUUUAUU-UUGGAGCGACUUCCGUUUGUUCUACAUUGACAUGCCAAAGUCGGACCCGCUCAGUUACUACUGUAGUCA--GUAGUCGGUAGUCAGUCCAGUCCAUCCAUCCAUCC ........-.((((..(((((..((.((((.......)))).))..)))))((((..(((.(.(.(((((((....))--))))).).))))..))))......))))....... ( -29.10) >DroSim_CAF1 3328 112 + 1 AAUUUAUU-UUGGAGCGACUUCCGUUUGUUCUACAUUGACAUGCCAAAGUCGGACCCGCUCAGUUACUACUGUAGUCA--GUAGUCGGUAGUCAGUCCAGUCCAUCCAUCCAUCC ........-.((((..(((((..((.((((.......)))).))..)))))((((..(((.(.(.(((((((....))--))))).).))))..))))......))))....... ( -29.10) >DroEre_CAF1 1880 98 + 1 AAUUUAUUUUUGGAGCGACUUCCGUUUGUUCUACAUUGACAUGCCAAAGUCGGACCCGCUCAGUUACUACUG--------GUAGUCCGUAGUCGGUCCA---------UCCAUCC ..........((((.(((((...((.((((.......)))).))......(((((..((.((((....))))--------)).))))).))))).))))---------....... ( -27.10) >consensus AAUUUAUU_UUGGAGCGACUUCCGUUUGUUCUACAUUGACAUGCCAAAGUCGGACCCGCUCAGUUACUACUGUAGUCA__GUAGUCGGUAGUCAGUCCAGUCCAUCCAUCCAUCC ..........((((..(((((..((.((((.......)))).))..)))))((((..(((.....(((((..........)))))....)))..))))..........))))... (-22.46 = -22.28 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:55 2006