Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,467,634 – 7,467,739 |
Length | 105 |
Max. P | 0.794734 |
Location | 7,467,634 – 7,467,739 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 99.53 |
Mean single sequence MFE | -25.55 |
Consensus MFE | -25.17 |
Energy contribution | -25.18 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 0.99 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7467634 105 - 22224390 UCUCCAACAAUGAAAUAUGUGAUUCAAUGACUUCCUCCCAAUUAAAGGCUGCGCUUG-GCUGUCUAUUUUUGGCUUCCUCAAGGAAUUACAGACCUCAUUUUCGGA ..(((...(((((....((((((((..(((.......((((..(.((((.((.....-)).)))).)..)))).....)))..))))))))....)))))...))) ( -25.50) >DroSec_CAF1 948 105 - 1 UCUCCAACAAUGAAAUAUGUGAUUCAAUGACUUCCUCCCAAUUAAAGGCUGCGCUUG-GCUGUCUAUUUUUGGCUUCCUCAAGGAAUUACAGACCUCAUUUUCGGA ..(((...(((((....((((((((..(((.......((((..(.((((.((.....-)).)))).)..)))).....)))..))))))))....)))))...))) ( -25.50) >DroSim_CAF1 2649 105 - 1 UCUCCAACAAUGAAAUAUGUGAUUCAAUGACUUCCUCCCAAUUAAAGGCUGCGCUUG-GCUGUCUAUUUUUGGCUUCCUCAAGGAAUUACAGACCUCAUUUUCGGA ..(((...(((((....((((((((..(((.......((((..(.((((.((.....-)).)))).)..)))).....)))..))))))))....)))))...))) ( -25.50) >DroEre_CAF1 1125 106 - 1 UCUCCAACAAUGAAAUAUGUGAUUCAAUGACUUCCUCCCAAUUAAAGGCUGCGCUUGGGCUGUCUAUUUUUGGCUUCCUCAAGGAAUUACAGACCUCAUUUUCGGA ..(((...(((((....((((((((..(((.......((((..(.((((.((......)).)))).)..)))).....)))..))))))))....)))))...))) ( -25.70) >consensus UCUCCAACAAUGAAAUAUGUGAUUCAAUGACUUCCUCCCAAUUAAAGGCUGCGCUUG_GCUGUCUAUUUUUGGCUUCCUCAAGGAAUUACAGACCUCAUUUUCGGA ..(((...(((((....((((((((..(((.......((((..(.((((.((......)).)))).)..)))).....)))..))))))))....)))))...))) (-25.17 = -25.18 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:52 2006