Locus 2774

Sequence ID X_DroMel_CAF1
Location 7,466,834 – 7,466,938
Length 104
Max. P 0.653171
window4529

overview

Window 9

Location 7,466,834 – 7,466,938
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 99.04
Mean single sequence MFE -30.58
Consensus MFE -30.14
Energy contribution -30.20
Covariance contribution 0.06
Combinations/Pair 1.03
Mean z-score -1.82
Structure conservation index 0.99
SVM decision value 0.25
SVM RNA-class probability 0.653171
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7466834 104 + 22224390
GUGCCAGCGAAUGUUUGUGCCUUUUACUGUUGGCUUUAAUUAGAACAUUUCACUCUUUUUUGGGGUGGCAACAGUUGGGCGGCUUUAAGCCAAAAACUCCGUUC
.....((((...((((..((((...(((((((.((......))......(((((((.....)))))))))))))).))))(((.....)))..))))..)))). ( -30.50)
>DroSec_CAF1 143 104 + 1
GUGCCAGCGAAUGUUUGUGCCUUUUACUGUUGGCUUUAAUUAGAACAUUUCACUCUUUUUUGGGGUUGCAACAGUUGGGCGGCUUUAAGCCAAAAACUCCGUUC
.....((((...((((..((((...((((((((((((((..(((.........)))...)))))))..))))))).))))(((.....)))..))))..)))). ( -28.40)
>DroSim_CAF1 1846 104 + 1
GUGCCAGCGAAUGUUUGUGCCUUUUACUGUUGGCUUUAAUUAGAACAUUUCACUCUUUUUUGGGGUGGCAACAGUUGGGCGGCUUUAAGCCAAAAACUCCGUUC
.....((((...((((..((((...(((((((.((......))......(((((((.....)))))))))))))).))))(((.....)))..))))..)))). ( -30.50)
>DroEre_CAF1 328 104 + 1
GUGCCAGCGAAUGUUUGUGCCUUUUACUGUUGGCUUUAAUUAGAACAUUUCACUCUUUUUUGGGGUGGCAACAGUUGGGCGGCUUUAAGCCAAAAACUCCGCUC
.....((((...((((..((((...(((((((.((......))......(((((((.....)))))))))))))).))))(((.....)))..))))..)))). ( -32.90)
>consensus
GUGCCAGCGAAUGUUUGUGCCUUUUACUGUUGGCUUUAAUUAGAACAUUUCACUCUUUUUUGGGGUGGCAACAGUUGGGCGGCUUUAAGCCAAAAACUCCGUUC
.....((((...((((..((((...(((((((.((......))......(((((((.....)))))))))))))).))))(((.....)))..))))..)))). (-30.14 = -30.20 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:51 2006