Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,466,584 – 7,466,680 |
Length | 96 |
Max. P | 0.729201 |
Location | 7,466,584 – 7,466,680 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.35 |
Mean single sequence MFE | -23.00 |
Consensus MFE | -20.06 |
Energy contribution | -19.88 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.57 |
Structure conservation index | 0.87 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729201 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7466584 96 + 22224390 GACUCG--------------------C----CGGUUUUUCCUUUAAAUUUAAUUUCUUUUGCUAGUUUUUUGCCGGGCCAGCUGACGACGUCGUUGUCGGCUUGCUUAGAAUUUUCGUUA (((...--------------------(----((((.....((.((((..........))))..))......)))))((.((((((((((...)))))))))).))...........))). ( -23.50) >DroSim_CAF1 1599 96 + 1 GACUCG--------------------C----CGGUUUUUCCUUUAAAUUUAAUUUCUUUUGCUAGUUUUUUGCCGGGCCAGCUGACGACGUCGUUGUCGGCUUGCUUAGAAUUUUCGUUA (((...--------------------(----((((.....((.((((..........))))..))......)))))((.((((((((((...)))))))))).))...........))). ( -23.50) >DroEre_CAF1 84 96 + 1 GACUCC--------------------C----CGGUUUUUCCUUUAAAUUUAAUUUCUUUUGCUAGUUUUUUGCCGGGCCAGCUGACGACGUCGUUGUCGGCUUGCUUAGAAUUUUCGUUA (((...--------------------(----((((.....((.((((..........))))..))......)))))((.((((((((((...)))))))))).))...........))). ( -23.60) >DroYak_CAF1 1836 120 + 1 UACUCCACCCCCCCAACCCCCUUUCCCCGCUUGGUUUUUCCUUUAAAUUUAAUUUCUUUUGCUAGUUUUUUGCCGGGCCAGCUGACGACGUCGUUGUCGGCUUGCUUAGAAUUUUCGUUA ..............(((.....(((...(((((((.....((.((((..........))))..))......))))))).((((((((((...))))))))))......))).....))). ( -21.40) >consensus GACUCC____________________C____CGGUUUUUCCUUUAAAUUUAAUUUCUUUUGCUAGUUUUUUGCCGGGCCAGCUGACGACGUCGUUGUCGGCUUGCUUAGAAUUUUCGUUA ...............................(((...(((....................((.........)).((((.((((((((((...)))))))))).)))).)))...)))... (-20.06 = -19.88 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:50 2006