Locus 2772

Sequence ID X_DroMel_CAF1
Location 7,465,786 – 7,465,934
Length 148
Max. P 0.652799
window4526 window4527

overview

Window 6

Location 7,465,786 – 7,465,896
Length 110
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 84.53
Mean single sequence MFE -31.86
Consensus MFE -26.52
Energy contribution -27.52
Covariance contribution 1.01
Combinations/Pair 1.10
Mean z-score -1.52
Structure conservation index 0.83
SVM decision value 0.06
SVM RNA-class probability 0.566012
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7465786 110 + 22224390
UGUCUGUCCGUCCCUCUCUGUCGCCACCGCAAAACGUGCGUAAUUAAAAGUGAGGGAGUGUGCGUGAGUGUUUACAGUUUAUACUGCAGCAUUCACAAAAGUCUUUAAAG----------
.....(..((((((((.((........((((.....))))........)).)))))).))..)(((((((((..((((....)))).)))))))))..............---------- ( -32.69)
>DroSim_CAF1 809 109 + 1
UGUCUGUCCGUCCCUCUCUGUCGCCACCGCAAAACGUGCGUAAUUAAAAGUGAGGGAGUGUGCGUGAGUGUUUACAGU-UAUACUGUAGCAUUCACAAAAGUCUUUAAAG----------
.....(..((((((((.((........((((.....))))........)).)))))).))..)(((((((((.((((.-....)))))))))))))..............---------- ( -34.59)
>DroYak_CAF1 940 117 + 1
UGUCUGUCUCUCUCUCGCUGUCGCCACCGCAAAACGUGCGUAAUUAAAAGUGAGGCAGUGUGCGUGAGUGUUUACACU-UAAAACGUGGCAUUCACAGAAAG--UUAAAGUUAAAUUUAA
..(((((......((((((........((((.....))))........))))))((..(((...((((((....))))-))..)))..))....)))))...--................ ( -28.29)
>consensus
UGUCUGUCCGUCCCUCUCUGUCGCCACCGCAAAACGUGCGUAAUUAAAAGUGAGGGAGUGUGCGUGAGUGUUUACAGU_UAUACUGUAGCAUUCACAAAAGUCUUUAAAG__________
.....(..((((((((.((........((((.....))))........)).)))))).))..)(((((((((.(((((....))))))))))))))........................ (-26.52 = -27.52 +   1.01)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 7

Location 7,465,826 – 7,465,934
Length 108
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 73.49
Mean single sequence MFE -24.97
Consensus MFE -12.70
Energy contribution -13.70
Covariance contribution 1.00
Combinations/Pair 1.10
Mean z-score -2.10
Structure conservation index 0.51
SVM decision value 0.25
SVM RNA-class probability 0.652799
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7465826 108 + 22224390
UAAUUAAAAGUGAGGGAGUGUGCGUGAGUGUUUACAGUUUAUACUGCAGCAUUCACAAAAGUCUUUAAAG------------AAUUAAUCAUAAUUAUUUAUGUCGAAUUUUUGGACAAA
.......................(((((((((..((((....)))).)))))))))....((((...(((------------((((...(((((....)))))...)))))))))))... ( -24.30)
>DroSim_CAF1 849 107 + 1
UAAUUAAAAGUGAGGGAGUGUGCGUGAGUGUUUACAGU-UAUACUGUAGCAUUCACAAAAGUCUUUAAAG------------AAAUAAUCCUAAUUAUUUAAGACGAAUUUUUGGACAAA
.........((..((((((...((((((((((.((((.-....)))))))))))))....(((((.....------------(((((((....))))))))))))).))))))..))... ( -24.90)
>DroYak_CAF1 980 114 + 1
UAAUUAAAAGUGAGGCAGUGUGCGUGAGUGUUUACACU-UAAAACGUGGCAUUCACAGAAAG--UUAAAGUUAAAUUUAAAGUCCAAUUUUGAACUCAUUCUUUUGAGUUUU-G--CAAA
.........(((((((..(((...((((((....))))-))..)))..)).))))).((...--(((((......)))))..)).......(((((((......))))))).-.--.... ( -25.70)
>consensus
UAAUUAAAAGUGAGGGAGUGUGCGUGAGUGUUUACAGU_UAUACUGUAGCAUUCACAAAAGUCUUUAAAG____________AAAUAAUCAUAAUUAUUUAUGUCGAAUUUUUGGACAAA
..........((((((.(....)(((((((((.(((((....)))))))))))))).....))))))..................................................... (-12.70 = -13.70 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:50 2006