Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 937,209 – 937,301 |
Length | 92 |
Max. P | 0.589597 |
Location | 937,209 – 937,301 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 88.72 |
Mean single sequence MFE | -23.25 |
Consensus MFE | -16.46 |
Energy contribution | -16.77 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.05 |
Mean z-score | -1.67 |
Structure conservation index | 0.71 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589597 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 937209 92 + 22224390 AAACUAUUUAUGUAUCCCCGCUAAUGGCCAGAGUUGGUCGGGGAAGCAGAAAGAAAACCAGGAAAAUUAAUCGAAAUAAAGUGGUUUGG---------GCA (((((((((.(((.(((((((((((.......))))).)))))).))).............((.......))......)))))))))..---------... ( -22.70) >DroSec_CAF1 20316 97 + 1 AAACUAUUUAUGUAUCCCCGCUAAUGGCCAGAGUUGGUCGGGGAAGUAGAAAGAAAACCAGGAGAAUUAAGCGAAAUGAAGUGGUUUGGG----GUAGGCA ...((((((.....(((((((((((.......))))).))))))..........((((((.....(((......)))....)))))).))----))))... ( -22.60) >DroSim_CAF1 16363 97 + 1 AAACUAUUUAUGUAUCCCCGCUAAUGGCCAGAGUUGGUCGGGGAAGCAGAAAGAAAACCAGGAAAAUUAAGCGAAAUGAAGUGGUUUGGG----GUAGGCA ...((((((.(((.(((((((((((.......))))).)))))).)))......((((((.....(((......)))....)))))).))----))))... ( -25.50) >DroEre_CAF1 28515 100 + 1 AAACUAUUUACGAAUCCCCGCUAAUGGCCAGAGUUG-CCGGGGAACCAGAAAGAAAACCAGGAAAAUGAAGCGAAAUCAAGUGUUUUGGAUGGGGUAGGUA ....(((((((...((((((.((((.......))))-.)))))).(((.........((((((...(((.......)))....)))))).))).))))))) ( -22.20) >consensus AAACUAUUUAUGUAUCCCCGCUAAUGGCCAGAGUUGGUCGGGGAAGCAGAAAGAAAACCAGGAAAAUUAAGCGAAAUGAAGUGGUUUGGG____GUAGGCA (((((((((..(..(((((((((((.......))))).))))))..).....(.....)...................))))))))).............. (-16.46 = -16.77 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:39 2006