Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,462,156 – 7,462,259 |
Length | 103 |
Max. P | 0.608090 |
Location | 7,462,156 – 7,462,259 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 90.10 |
Mean single sequence MFE | -24.71 |
Consensus MFE | -17.65 |
Energy contribution | -17.90 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.71 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.608090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7462156 103 + 22224390 GA------------UCAUCAUCCGU-UGUUGUUGUGCCCAAAUAAUGCUUAAACAUAUGAAUUACUAUAUAGAUCAACUGCAAAUGUACAGCGACAACGAGAAGACAGAUCCCCAG ((------------((.((.(((((-(((((((((((.......(((......))).(((.(((.....))).))).........)))))))))))))).)).))..))))..... ( -25.80) >DroSec_CAF1 210451 103 + 1 GA------------UCAUCAUCCGU-UGUUGUUGUGCCCAAAUAAUGCUUAAACAUAUGAAUUACUAUAUAGAUCAACUGCAAAUGUACAGCGACAACGAGAAGACAGAUCCAUAG ((------------((.((.(((((-(((((((((((.......(((......))).(((.(((.....))).))).........)))))))))))))).)).))..))))..... ( -25.80) >DroEre_CAF1 226404 108 + 1 GAUCG----G---AUCAUCAUCCGU-UGUUGUUGUGCCCAAAUAAUGCUUAAACAUAUGAAUUACUAUAUAGAUCAACUGCAAAUGUACAGCGACAACGGGAAGACAGAGCAGCAG .....----.---.......(((((-(((((((((((.......(((......))).(((.(((.....))).))).........))))))))))))))))............... ( -24.20) >DroYak_CAF1 257644 116 + 1 GAUUGUGUGGAUCAUCAUCAUCCGUUUGUUGUUGUGCCCAAAUAAUGCUUAAACAUAUGAAUUACUAUAUAGAUCAACUGCAAAUGUACAGCGACAACGAGCAGACAGAUCAACAG ((((.(((((((.......))))((((((((((((..........(((.......((((........))))........)))........))))))))))))..)))))))..... ( -23.03) >consensus GA____________UCAUCAUCCGU_UGUUGUUGUGCCCAAAUAAUGCUUAAACAUAUGAAUUACUAUAUAGAUCAACUGCAAAUGUACAGCGACAACGAGAAGACAGAUCAACAG .................((.(((((.(((((((((((.......(((......))).(((.(((.....))).))).........)))))))))))))).)).))........... (-17.65 = -17.90 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:45 2006