Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,458,961 – 7,459,072 |
Length | 111 |
Max. P | 0.999335 |
Location | 7,458,961 – 7,459,072 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 94.78 |
Mean single sequence MFE | -29.03 |
Consensus MFE | -27.40 |
Energy contribution | -27.44 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.08 |
Structure conservation index | 0.94 |
SVM decision value | 3.52 |
SVM RNA-class probability | 0.999335 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7458961 111 + 22224390 -----CGAACCGAACCGUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCAGUGGCAUCAGCGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA -----...........((..((((((((((((((((((((....((......))....))))))).))......(((....)))..))))))))))).))................ ( -29.40) >DroSec_CAF1 207266 111 + 1 -----CGAACCGAACCGUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCAGUGGCAUCAGCGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA -----...........((..((((((((((((((((((((....((......))....))))))).))......(((....)))..))))))))))).))................ ( -29.40) >DroSim_CAF1 200390 111 + 1 -----CGAACCGAACCGUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCAGUGGCAUCAGCGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA -----...........((..((((((((((((((((((((....((......))....))))))).))......(((....)))..))))))))))).))................ ( -29.40) >DroEre_CAF1 222925 111 + 1 -----CGUACCGAACCGUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCCGUGGCAUCUGCGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA -----.((((.((....))..(((((((((((((((((((....((......))....))))))).))......(((....)))..))))))))))))))................ ( -29.90) >DroYak_CAF1 253970 116 + 1 CAAACCGAACUGAAUCCUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCAUCGGCAUCGGUGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA ....................(((((((((((.(((((((..............))))))).)....((.(((.........))).))))))))))))................... ( -27.04) >consensus _____CGAACCGAACCGUCUUACAAAAGCUGGCGAUGCCAAAAAUGAAGAAGCGGCAGUGGCAUCAGCGGAAAAGAAAAGAUUCGACGGCUUUUGUGUACAACUUAAUAACAACUA ....................((((((((((((((((((((....((......))....))))))).))......(((....)))..)))))))))))................... (-27.40 = -27.44 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:44 2006