Locus 2765

Sequence ID X_DroMel_CAF1
Location 7,452,408 – 7,452,505
Length 97
Max. P 0.640294
window4514

overview

Window 4

Location 7,452,408 – 7,452,505
Length 97
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 88.73
Mean single sequence MFE -31.14
Consensus MFE -20.72
Energy contribution -21.16
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -2.46
Structure conservation index 0.67
SVM decision value 0.22
SVM RNA-class probability 0.640294
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7452408 97 - 22224390
CUGAGAAC------CCAAGUCGCAGUCGCAGAUGCGUU-GCUGCAGUCUGAGAGGAAAAUCGGUUGAAAAGCGG-------UUAGGAUUUGGGUGGAAAAUUGUUGGUAAA
......((------(((((((((((((((....)))..-)))))..(((....))).(((((.((....)))))-------))..)))))))))................. ( -30.20)
>DroSec_CAF1 200659 97 - 1
CUGAGAAC------CCAAGUCGCAGUCGCAGAUGCGUU-GCUGCAGUCUGAGAGGAAAAUCGGUUGAAAAGCGG-------UAGGGAUUUGGGUGGAAAAUUGUUGGUAAA
......((------(((((((((((((((....)))..-)))))..(((....)))....(.(((....))).)-------....)))))))))................. ( -29.40)
>DroSim_CAF1 195593 97 - 1
CUGAGAAC------CCAAGUCGCAGUCGCAGAUGCGUU-GCUGCAGUCUGAGAGGAAAAUCGGUUGAAAAGCGG-------UAGGGAUUUGGGUGGAAAAUUGUUGGUAAA
......((------(((((((((((((((....)))..-)))))..(((....)))....(.(((....))).)-------....)))))))))................. ( -29.40)
>DroEre_CAF1 216032 105 - 1
CUGAGAAC-----CCAAAGUCGCAGUCGCAGAUGCGUU-GCUGCAGUCUGAGAGGAAAAUCGGUUGAAAAGCGUUUAGGUUUGGGGUUUUGGGUGGAAAAUAGUCGGUAAC
((.(((((-----((.((..(((((((((....)))..-)))))..(((....)))......(((....))).....)..)).))))))).)).................. ( -29.10)
>DroYak_CAF1 246799 104 - 1
CUGAGACCGAGAAUCCAAGUCGCAGUCGCAGAUGCGUUGGCUGCAGUCUGAGAGGAAAAGCGCUUGAAAGGCGG-------UAGGGAUUUGGGUGGAAAAUUCUCGGUAAA
.....((((((((((((((((((((((((....)))...)))))..(((....)))....((((.....)))).-------....))))))))).......)))))))... ( -37.61)
>consensus
CUGAGAAC______CCAAGUCGCAGUCGCAGAUGCGUU_GCUGCAGUCUGAGAGGAAAAUCGGUUGAAAAGCGG_______UAGGGAUUUGGGUGGAAAAUUGUUGGUAAA
..............(((((((((((((((....)))...)))))..(((....)))......(((....))).............)))))))................... (-20.72 = -21.16 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:38 2006