Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,451,590 – 7,451,710 |
Length | 120 |
Max. P | 0.594643 |
Location | 7,451,590 – 7,451,710 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.39 |
Mean single sequence MFE | -18.86 |
Consensus MFE | -12.09 |
Energy contribution | -12.78 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.11 |
Mean z-score | -1.87 |
Structure conservation index | 0.64 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7451590 120 + 22224390 UUAUAAAGCAAAUCAAGAACAUAAAUAGCUUAAAAACAUAAAACAUAACAUAGAACAGGUAAGGUAAUCAACUUUUAAUAAGUUGGAUGUCUUGAUGGAAGUUCGAAAGUAUUUCGAAAA ...........(((((((.(((...((.((((...........................)))).)).(((((((.....))))))))))))))))).(((((.(....).)))))..... ( -20.03) >DroSec_CAF1 199833 120 + 1 UUUAAAAGCAAAUCAAGAACAUAAACAACUUAAAAACAUAAAACAGAACAUAGAACAGGUAAGGUAAUCAAUUUUUAAUAAGUUGGAUGUCUUGAUGGAAGUUCGAAAAUAUUUCGAAAA ...........(((((((.(((...(((((((....(........)...........(((......))).........))))))).)))))))))).....((((((.....)))))).. ( -19.00) >DroSim_CAF1 194753 120 + 1 UUUGAAAGCAAAUCAAGAACAUAAACAACUUAAAAACAUAAAACAGAACAUAGAACAGGUAAGGUAAUCAACUUUUAAUAAGUUGGAUGUCUUAAUGGAAGUUCGAAAAUAUUUCGAAAA (((((((.........((((.(((.....))).......................((..((((..(.(((((((.....))))))).)..)))).))...)))).......))))))).. ( -17.79) >DroYak_CAF1 245886 113 + 1 UUCGAAAGUAAAUUAAGAAUAUAAGCAACUUAAAAAAUA-GAG------AUAGAACAGGUAAGGGAAUCAACUUUUAAUAAAUUGCAUGUCUUCAAGCAAGUUCGAAAAAUUUUCGAAAA (((((((((...(((((...........)))))......-...------...((((...((((((......)))))).....((((.((....)).)))))))).....))))))))).. ( -18.60) >consensus UUUGAAAGCAAAUCAAGAACAUAAACAACUUAAAAACAUAAAACAGAACAUAGAACAGGUAAGGUAAUCAACUUUUAAUAAGUUGGAUGUCUUGAUGGAAGUUCGAAAAUAUUUCGAAAA ...........(((((((.(((...(((((((...........(........)....(((......))).........))))))).)))))))))).....((((((.....)))))).. (-12.09 = -12.78 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:37 2006