Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,444,563 – 7,444,656 |
Length | 93 |
Max. P | 0.619626 |
Location | 7,444,563 – 7,444,656 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -23.62 |
Consensus MFE | -18.76 |
Energy contribution | -19.60 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.05 |
Mean z-score | -1.53 |
Structure conservation index | 0.79 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619626 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7444563 93 + 22224390 UUAAUAAUCCACCUGCCAUCUGCCCUGGCAACAAGAAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA .......((((...((((..((((.((....))................((((((......))))))))))..))))(((....)))..)))) ( -25.10) >DroSec_CAF1 192990 93 + 1 UUAAUAAUCCACCUGCCAUCUGCCCUGGCAACAAGAAAUAAAGAUCUCGAGUCAAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA .......((((...((((..((((.((....))................((((((......))))))))))..))))(((....)))..)))) ( -25.40) >DroSim_CAF1 187888 93 + 1 UUAAUAAUCCACCUGCCUUCUGCCCUGGCAACAAGAAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA ........((((.((((...(((....)))...................((((((......)))))))))).))))((((....))))..... ( -23.20) >DroEre_CAF1 207919 93 + 1 UUAAUAAUCCACCUGCCAUAUGCCCUGGCAACAAGAAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA .......((((...(((((.((((.((....))................((((((......)))))))))).)))))(((....)))..)))) ( -25.00) >DroYak_CAF1 237411 81 + 1 UUAAUAAUCCACC------------UGGCAACCAGAAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA ........(((((------------(((...)))).........((.(.((((((......)))))).).))))))((((....))))..... ( -19.40) >consensus UUAAUAAUCCACCUGCCAUCUGCCCUGGCAACAAGAAAUAAAGAUCUCGAGUCGAGUACAAUUGACUGGCGAGUGGCACUUAAGAGUGAUGGA ........((((.((((........((....))................((((((......)))))))))).))))((((....))))..... (-18.76 = -19.60 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:35 2006