Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,441,517 – 7,441,614 |
Length | 97 |
Max. P | 0.739124 |
Location | 7,441,517 – 7,441,614 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 82.78 |
Mean single sequence MFE | -22.57 |
Consensus MFE | -14.02 |
Energy contribution | -14.72 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.06 |
Mean z-score | -2.65 |
Structure conservation index | 0.62 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.739124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7441517 97 + 22224390 ACCCAUACCCAAUCCCAAUCCCAAGCCCAAAUCCUUUUUGUGCGAAAAUUUGCCA---GCUCGGAGAAUGGAAAGUUGGCAAAACAGCGAAAAACAU-UUG ...........................(((((..(((((((.......(((((((---(((............))))))))))...)))))))..))-))) ( -17.20) >DroSec_CAF1 189598 97 + 1 ACCCAUACCCAAUCCCAAUCCCAAACCCAAAUCCUUUUUGUGCGAAAAUUUGCCA---GCUCUGAGAAUGGAAAGUUGGCAAAACAGCGCAAAACAU-UUG ...........................(((((...((((((((.....(((((((---(((((......)))..)))))))))...)))))))).))-))) ( -22.70) >DroSim_CAF1 184887 97 + 1 ACCCAUACCCAAUCCCAAUCCCAAACCCAAAUCCUUUUUGUGCGAAAAUUUGCCA---GCUCUGAGAAUGGAAAGUUGGCAAAACAGCGCAAAACAU-UUG ...........................(((((...((((((((.....(((((((---(((((......)))..)))))))))...)))))))).))-))) ( -22.70) >DroEre_CAF1 204767 91 + 1 AC------CCAAACCCAAUCCCAAACCCAAAUCCUUUUUGUGCGAAAAUUUGCCA---GCUCGCAGAAUGGAAAGUUGGCAAAACAGCGCAAAACAU-UUG ..------...................(((((...((((((((.....(((((((---(((..(......)..))))))))))...)))))))).))-))) ( -24.00) >DroYak_CAF1 233922 97 + 1 ACCCAUAUCCAAACCCAAAUGCAAACCCAAAUCCUUUUUGUGCCAAAAUUUGCCA---GCUCGAAGAAUGGAAAGUUGGCAAAACAGCGCAAAACAU-UUG ...............((((((..............((((((((.....(((((((---(((............))))))))))...)))))))))))-))) ( -21.13) >DroAna_CAF1 196009 90 + 1 CAUCGAACCCUUUC-----------CCCAGGGCCCUUCUGUGCGAAAAUCUGCCAACGGCCGGAAGAAAGGAAAGUUGGCAAAACAUCGCAAAUCAGAUUG .......((((...-----------...))))....(((((((((.....(((((((..((........))...))))))).....)))))...))))... ( -27.70) >consensus ACCCAUACCCAAUCCCAAUCCCAAACCCAAAUCCUUUUUGUGCGAAAAUUUGCCA___GCUCGGAGAAUGGAAAGUUGGCAAAACAGCGCAAAACAU_UUG ...................................((((((((.....(((((((....((........)).....)))))))...))))))))....... (-14.02 = -14.72 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:32 2006