Locus 2759

Sequence ID X_DroMel_CAF1
Location 7,434,164 – 7,434,269
Length 105
Max. P 0.929132
window4506

overview

Window 6

Location 7,434,164 – 7,434,269
Length 105
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 77.65
Mean single sequence MFE -24.33
Consensus MFE -13.52
Energy contribution -13.13
Covariance contribution -0.39
Combinations/Pair 1.17
Mean z-score -2.24
Structure conservation index 0.56
SVM decision value 1.20
SVM RNA-class probability 0.929132
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7434164 105 - 22224390
UG-AAAGAAAGCCGCAACCGACACCGGCAAGCAAUUGUUGUGCUGUGUU-UGGGUUAUUUUUAC--UCUUUUUUUUCGCUU-UGGGUUUU-CCAUACUUCA-UUUU----UUCUUC
..-...(((((((.(((..(((((.(((((((....))).)))))))))-.((((.......))--))............)-))))))))-).........-....----...... ( -20.90)
>DroPse_CAF1 230047 98 - 1
AG-AAAGAAAGCCACAACCAACACCGGCAA-CAAUUGUUGUUGGGUGUUUUGGGUUAUUC------UUUUCUUUUUCGC---UGGUUUUUUUCUUUCUCC-------UUCUUCCCU
((-((((((((....(((((...(((((((-(....))))))))(((....(((......------...)))....)))---))))).))))))))))..-------......... ( -25.10)
>DroEre_CAF1 197416 109 - 1
AG-AAGGAAAGCCGCAACCGACACCGGCAAGCAAUUGUUGUGCUGUGUU-UGGGUUAUUUCUAC--UCCUUUUUUUCGGUU-UGGUUUUU-CCAUUCUUCA-UUUUUUUCUUCUCC
((-(((((((((((.(((((((((.(((((((....))).)))))))..-.((((.......))--)).......))))))-))).))))-)).))))...-.............. ( -27.60)
>DroYak_CAF1 225724 111 - 1
AGAAAAGAAAGCCGCAACCGACACCGGCAAGCAAUUGUUGUGCUGUGUU-UGGGUUAUUUCUAC--UCUUUUUUUUCGGUU-UGGUUUUU-CCAUUCUUCAAUUUUUUUUCUCUCC
((((..((((((((.(((((((((.(((((((....))).)))))))..-.((((.......))--)).......))))))-))))))))-...)))).................. ( -25.40)
>DroAna_CAF1 189736 110 - 1
UA-AAAGAAAGCCACAACCGA-ACCGGCGAGCAAUUGUUGUGCUGUGUU-UGGGUUAUUUUCCCCGUCUUUGUUUUUGUUUCUGGCUUUU-ACAUUCUUAA-UUUU-UUCUUCUCC
..-...((((((((.(((.((-((((((((((....))).))))).)))-)(((........)))............)))..))))))))-..........-....-......... ( -23.60)
>DroPer_CAF1 263387 96 - 1
AG-AAAGAAAGCCACAACCAACACCGGCAA-CAAUUGUUGUUGGGUGUUUUGGGUUAUUC------UUUUCUUUUUCGC---UGGUUUUUU--UUUCUCC-------UUCUUCCCU
.(-(((((((((((.........(((((((-(....))))))))(((....(((......------...)))....)))---)))))))))--)))....-------......... ( -23.40)
>consensus
AG_AAAGAAAGCCACAACCGACACCGGCAAGCAAUUGUUGUGCUGUGUU_UGGGUUAUUU_UAC__UCUUUUUUUUCGCUU_UGGUUUUU_CCAUUCUUCA_UUUU_UUCUUCUCC
......((((((((.(((((((((((((((....))))))....)))))...))))..........................)))))))).......................... (-13.52 = -13.13 +  -0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:31 2006