Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,427,099 – 7,427,192 |
Length | 93 |
Max. P | 0.592720 |
Location | 7,427,099 – 7,427,192 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 86.09 |
Mean single sequence MFE | -22.83 |
Consensus MFE | -15.74 |
Energy contribution | -15.74 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.17 |
Structure conservation index | 0.69 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7427099 93 + 22224390 UGUCAAAUGCAUUUCUGGCGACAUAAAAAUCUC-CUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUAACGAGA-----------GG ((((....((.......)))))).......(((-.(((...(((((((.((((((((...........)))))))).)))))))...)))))-----------). ( -23.70) >DroVir_CAF1 231574 98 + 1 UGUCAAAUGCAU-------GACAUAAAAAUCUUUGUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUACGUGGACGAGUCAAUGCUG ........((((-------(((..........(((((.(..(((((((.((((((((...........)))))))).)))))))....).)))))))).)))).. ( -25.60) >DroPse_CAF1 221584 93 + 1 UGUCAAAUGCAUUCCUGGCGACAUAAAAAUCUU-CUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUAACAAGA-----------GG ((((....((.......)))))).......(((-((.(...(((((((.((((((((...........)))))))).)))))))...).)))-----------)) ( -20.90) >DroYak_CAF1 217746 93 + 1 UGUCAAAUGCAUUUCUGGCGACAUAAAAAUCUC-CUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUAACUAGA-----------GG ((((....((.......)))))).........(-(((....(((((((.((((((((...........)))))))).)))))))......))-----------)) ( -22.20) >DroMoj_CAF1 266309 84 + 1 UGUCAAAUGCAC-------GACAUAAAAAUCUUUGUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUACGA--------------CG ((((........-------))))...........((((...(((((((.((((((((...........)))))))).)))))))..)))--------------). ( -23.70) >DroPer_CAF1 254901 93 + 1 UGUCAAAUGCAUUCCUGGGGACAUAAAAAUCUU-CUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUAACAAGA-----------GG ...............((....)).......(((-((.(...(((((((.((((((((...........)))))))).)))))))...).)))-----------)) ( -20.90) >consensus UGUCAAAUGCAUU_CUGGCGACAUAAAAAUCUU_CUCGAAUCGUUAAAAAUGCAUCAUCAUCAAUUUUUGAUGCAUAUUUAAUGUAACAAGA___________GG ((((...............))))..................(((((((.((((((((...........)))))))).)))))))..................... (-15.74 = -15.74 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:26 2006