Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,415,317 – 7,415,407 |
Length | 90 |
Max. P | 0.627644 |
Location | 7,415,317 – 7,415,407 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 92.59 |
Mean single sequence MFE | -28.40 |
Consensus MFE | -25.49 |
Energy contribution | -25.93 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.04 |
Mean z-score | -1.78 |
Structure conservation index | 0.90 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627644 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7415317 90 - 22224390 CUGCAUCUAGUAUGAUGUGGUGCCUGCCACUGGUGGUGGUGGUUGUUUCCUUCCUUUUUAACGGGAUGAAUGUCCUGUUGGUGCGGGUCA (..((((......))))..).(((.(((((.....)))))))).........(((..((((((((((....))))))))))...)))... ( -30.10) >DroSec_CAF1 163971 90 - 1 CUGCAUCUAGUAUGAUGUGGUGCCUGCCACUGGUGGUGGUGGUUGUUUCCUUCCUUUUUAACGGAAUGAAUGUCCUGUUGGUGCGGGUCA (..((((......))))..).(((.(((((.....))))))))...(((.((((........)))).)))((.(((((....))))).)) ( -28.70) >DroEre_CAF1 178479 83 - 1 CUGCAUCUAGUAUGAUGUGGUA----CCACUGGU---GGUGGUUGUUUCCUUCCUUUUUAGCGGGAUGAAUGUCCUGUUGGUGCGGGUCA (..((((......))))..).(----((((....---.))))).........(((..((((((((((....))))))))))...)))... ( -26.40) >consensus CUGCAUCUAGUAUGAUGUGGUGCCUGCCACUGGUGGUGGUGGUUGUUUCCUUCCUUUUUAACGGGAUGAAUGUCCUGUUGGUGCGGGUCA (((((((...........((.....((((((......)))))).....)).........((((((((....))))))))))))))).... (-25.49 = -25.93 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:19 2006