Locus 275

Sequence ID X_DroMel_CAF1
Location 919,162 – 919,278
Length 116
Max. P 0.662817
window420

overview

Window 0

Location 919,162 – 919,278
Length 116
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 74.53
Mean single sequence MFE -32.36
Consensus MFE -15.23
Energy contribution -15.23
Covariance contribution 0.00
Combinations/Pair 1.32
Mean z-score -2.18
Structure conservation index 0.47
SVM decision value 0.27
SVM RNA-class probability 0.662817
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 919162 116 + 22224390
CUGCCACGAUAGUACUUAAAGUUUCUUAGAUGGCUUUAAAUAAUUAAGGUAGCUGUGUGGCAACAUUUUUGAAUAUCCUUCUGAUGGCUGCCUAGAGCUGCGUUUUGUGGCUGCCU
..(((((((....((((((((((........)))))))).........((((((.((.((((.((((...(((.....))).))))..)))))).)))))))).)))))))..... ( -35.80)
>DroSec_CAF1 10673 99 + 1
CUGCCACAAU-----------------AGAUGGCUUUAAAUAUUUAAGCUAGCUGUGUGGCAACACUUUUGAAUAUACUUCUGAUCGCUGCCUAGAGCUGCGUUUUGUGGCUGCUU
.(((((((.(-----------------((.((((((.........)))))).))))))))))........................((.(((((((((...)))))).))).)).. ( -28.90)
>DroEre_CAF1 11906 107 + 1
CUGCCACAAUUGUACUUAGAGUUGCUAAGAUGGCUUUAAAUAAUUGGGCCAGCUGUGCGGCCACACUUUUGAGUAUCCGUCUGAUGGCUGCUCC-UU-------CU-AGGCUGCUU
..(((.(((((((..((((((((........)))))))))))))))))).......((((((........(((((.((((...)))).))))).-..-------..-.)))))).. ( -32.64)
>DroYak_CAF1 11218 114 + 1
CUGCCACACUAGUACUUAAAGUUGCAAAGAUGGCUUUAAAUAAUUAAGCCAGUUGUGCG-CAACAUUUUUGAGUACCCUUCUCAUGACUGCCUA-AGCUGCGUACUGUGGCUGCUU
..((((((...((((((((((((((.(...((((((.........))))))....)..)-))))...))))))))).......(((...((...-.))..)))..))))))..... ( -32.10)
>consensus
CUGCCACAAUAGUACUUAAAGUUGCUAAGAUGGCUUUAAAUAAUUAAGCCAGCUGUGCGGCAACACUUUUGAAUAUCCUUCUGAUGGCUGCCUA_AGCUGCGUUCUGUGGCUGCUU
..((((((...................((.((((((.........)))))).))..(((((.........................)))))..............))))))..... (-15.23 = -15.23 +   0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:37 2006