Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 919,162 – 919,278 |
Length | 116 |
Max. P | 0.662817 |
Location | 919,162 – 919,278 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 74.53 |
Mean single sequence MFE | -32.36 |
Consensus MFE | -15.23 |
Energy contribution | -15.23 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.32 |
Mean z-score | -2.18 |
Structure conservation index | 0.47 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 919162 116 + 22224390 CUGCCACGAUAGUACUUAAAGUUUCUUAGAUGGCUUUAAAUAAUUAAGGUAGCUGUGUGGCAACAUUUUUGAAUAUCCUUCUGAUGGCUGCCUAGAGCUGCGUUUUGUGGCUGCCU ..(((((((....((((((((((........)))))))).........((((((.((.((((.((((...(((.....))).))))..)))))).)))))))).)))))))..... ( -35.80) >DroSec_CAF1 10673 99 + 1 CUGCCACAAU-----------------AGAUGGCUUUAAAUAUUUAAGCUAGCUGUGUGGCAACACUUUUGAAUAUACUUCUGAUCGCUGCCUAGAGCUGCGUUUUGUGGCUGCUU .(((((((.(-----------------((.((((((.........)))))).))))))))))........................((.(((((((((...)))))).))).)).. ( -28.90) >DroEre_CAF1 11906 107 + 1 CUGCCACAAUUGUACUUAGAGUUGCUAAGAUGGCUUUAAAUAAUUGGGCCAGCUGUGCGGCCACACUUUUGAGUAUCCGUCUGAUGGCUGCUCC-UU-------CU-AGGCUGCUU ..(((.(((((((..((((((((........)))))))))))))))))).......((((((........(((((.((((...)))).))))).-..-------..-.)))))).. ( -32.64) >DroYak_CAF1 11218 114 + 1 CUGCCACACUAGUACUUAAAGUUGCAAAGAUGGCUUUAAAUAAUUAAGCCAGUUGUGCG-CAACAUUUUUGAGUACCCUUCUCAUGACUGCCUA-AGCUGCGUACUGUGGCUGCUU ..((((((...((((((((((((((.(...((((((.........))))))....)..)-))))...))))))))).......(((...((...-.))..)))..))))))..... ( -32.10) >consensus CUGCCACAAUAGUACUUAAAGUUGCUAAGAUGGCUUUAAAUAAUUAAGCCAGCUGUGCGGCAACACUUUUGAAUAUCCUUCUGAUGGCUGCCUA_AGCUGCGUUCUGUGGCUGCUU ..((((((...................((.((((((.........)))))).))..(((((.........................)))))..............))))))..... (-15.23 = -15.23 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:37 2006