Locus 2748

Sequence ID X_DroMel_CAF1
Location 7,392,070 – 7,392,170
Length 100
Max. P 0.847696
window4490

overview

Window 0

Location 7,392,070 – 7,392,170
Length 100
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.37
Mean single sequence MFE -23.73
Consensus MFE -15.14
Energy contribution -15.08
Covariance contribution -0.05
Combinations/Pair 1.19
Mean z-score -1.90
Structure conservation index 0.64
SVM decision value 0.78
SVM RNA-class probability 0.847696
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7392070 100 + 22224390
UCUCGCUCC--UUGGCAACAACAAAUUGGAGAUCACGGUUUUCAUGUACUACAUGCAAAUUCAUUGCUACUGUUGCCCCCUGCGAGCGCCGUUGCCCGAACC
.(((((...--..((((((((((...(((((((....)))))))))).......((((.....))))...)))))))....)))))................ ( -25.60)
>DroGri_CAF1 174338 79 + 1
---------CAGCAGAGUCAACAAAUUGAAGAUCACGGUUUUCAUGUACUACAUGCAAAUUCAUUGCUACUGUUGCUCUCUGCC-------------CAGC-
---------..((((((.(((((...(((((((....)))))))..........((((.....))))...)))))..)))))).-------------....- ( -22.30)
>DroSec_CAF1 140708 100 + 1
UCUCGCUCC--UUAGCAACAACAAAUUGGAGAUCACGGUUUUCAUGUACUACAUGCAAAUUCAUUGCUACUGUUGCCCCCUGCGAGCGCAGUUGCCCGAACC
.(((((...--...(((((((((...(((((((....)))))))))).......((((.....))))...)))))).....))))).((....))....... ( -22.80)
>DroEre_CAF1 154006 99 + 1
UCUCGCUCC--UCGGCAACAACAAAUUGGAGAUCACGGUUUUCAUGUACUACAUGCAAAUUCAUUGCUACUGUUGCCC-CUGCGAGCGCCGUUGCCCAAACU
...((((((--..((((((((((...(((((((....)))))))))).......((((.....))))...))))))).-..).)))))..(((.....))). ( -26.10)
>DroYak_CAF1 177724 83 + 1
UCUCGCUCC--ACGGCAACAACAAAUUGGAGAUCACGGUUUUCAUGUACUACAUGCAAAUUCAUUGCUACUGUUGCCCCCUGCGA-----------------
..((((...--..((((((((((...(((((((....)))))))))).......((((.....))))...)))))))....))))----------------- ( -22.60)
>DroAna_CAF1 150589 97 + 1
ACCCA-UUC--CCGGCAACAACAAAUUGGAGAUCACGGUUUUCAUGUACUACAUGCAAAUUCAUUGCUACUGUUGCUCCCUGCGAUCGCAGCGGCCCAGA--
.....-...--..((((((((((...(((((((....)))))))))).......((((.....))))...)))))))((((((....)))).))......-- ( -23.00)
>consensus
UCUCGCUCC__UCGGCAACAACAAAUUGGAGAUCACGGUUUUCAUGUACUACAUGCAAAUUCAUUGCUACUGUUGCCCCCUGCGAGCGC_GUUGCCCAAAC_
.............((((((((((...(((((((....)))))))))).......((((.....))))...)))))))......................... (-15.14 = -15.08 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:17 2006