Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,384,728 – 7,384,820 |
Length | 92 |
Max. P | 0.680295 |
Location | 7,384,728 – 7,384,820 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 88.38 |
Mean single sequence MFE | -37.00 |
Consensus MFE | -23.76 |
Energy contribution | -24.20 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -2.61 |
Structure conservation index | 0.64 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680295 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7384728 92 + 22224390 CUGCCACUUGGGCCUGGGUCUUUGGCUUUGGUUCGGAGCAUAGCAAUCCGGACAAGAAAAAGAUGGUG--------------GUGGAAGUGGCGGGGCCAAAAGGG (((((((((..(((...((((((..((...(((((((.........))))))).))..))))))...)--------------))..)))))))))..((....)). ( -37.40) >DroSec_CAF1 133592 92 + 1 CUGCCACUUGGGCCUGGGUCUUUGGCUUUGGUUCGGAGCAUAGCAAUCCGGCCAAGAAAAAGAUGGUG--------------GUGUAAGUGGCGGGCCCAAAAGGG ((((((((((.(((...((((((..(((.(((.((((.........))))))))))..))))))...)--------------)).)))))))))).(((....))) ( -42.30) >DroSim_CAF1 133463 92 + 1 CUGCCACUUGGGCCUGGGUCUUUGGCUUUGGUUCGGAGCAUAGCAAUCCGGCCAAGAAAAAGAUGGUG--------------GUGGAAGUGGCGGGGCCAAAAGGG (((((((((..(((...((((((..(((.(((.((((.........))))))))))..))))))...)--------------))..)))))))))..((....)). ( -37.40) >DroEre_CAF1 146446 104 + 1 CUGCCACUUGGGCCUGGGUCUUUGGCUUUGGUUCGGAGCAUAGCAAUCUGGCCAAGAAAAAGAUGGUGGUGUGCCAGUGGUGGUGGGAG--GGGGGGCUAAAAGGG (..(((((.(((((..(((.....)))..)))))((.((((.((.((((...........)))).)).)))).))...)))))..)...--............... ( -30.90) >consensus CUGCCACUUGGGCCUGGGUCUUUGGCUUUGGUUCGGAGCAUAGCAAUCCGGCCAAGAAAAAGAUGGUG______________GUGGAAGUGGCGGGGCCAAAAGGG ((((((((((((((..(((.....)))..)))))(((.........))).((((.........))))...................)))))))))..((....)). (-23.76 = -24.20 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:15 2006