Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,381,787 – 7,381,901 |
Length | 114 |
Max. P | 0.722929 |
Location | 7,381,787 – 7,381,901 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.28 |
Mean single sequence MFE | -37.25 |
Consensus MFE | -15.25 |
Energy contribution | -15.45 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.33 |
Mean z-score | -1.98 |
Structure conservation index | 0.41 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.722929 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7381787 114 + 22224390 AGCAAAACGGGUGGUUUGAUUAUCUCCGGAAAGGGAAAUUUGCUUAAAUUCAUCAGCAUUUCCUUGCCGGUAGUCUCUAAUUUGAA------UUCUUCACCCCGCACACGCCAGUCUCCA ........((((((...(((((...((((.(((((((...((((..........))))))))))).)))))))))((......)).------....)))))).((....))......... ( -27.10) >DroSec_CAF1 130668 114 + 1 AGCAAAACGGGCGGUUUGAUUAUCUCCGGAUAGGGAAAUUUGCUUAGAUUCAUCAGCAUUUCCUUGCCGGUAGUCUCUAUAUUAAA------UUCUUCACCCCGCACAUGCCAGUCUCCA .(((......((((..(((....((((((.((((((((..((((.(......).)))))))))))))))).)).............------....)))..))))...)))......... ( -27.80) >DroSim_CAF1 130290 114 + 1 AGCAAAACGGGCGGUUUGAUUAUCUCCGGAUAGGGAAAUUUGCUUAGAUUCAUCAGCAUUUCCUUGCCGGUAGUCUCUAUAUUAAA------UUCUUCACCCCGCACAUGCCAGUCUCCA .(((......((((..(((....((((((.((((((((..((((.(......).)))))))))))))))).)).............------....)))..))))...)))......... ( -27.80) >DroEre_CAF1 143413 114 + 1 AACAGAACAGGCGGAUGGAUUAGGUCCGGAUAGGGAAAUUUGCUGAGAUUCAUCAGCAUUUCCUUGCCGGUAGUCUGGAAAUCGAA------UUCUCCACCGGGCAAACACCAGUCCCCA .........((.((((((.....((((((.((((((((..((((((......))))))))))))))((((....))))........------.......)))))).....))).))))). ( -41.20) >DroYak_CAF1 166427 114 + 1 AACAAAACGGGCGGAUGUAUGAUCUCCGGAUAGGGAAACUUGCUUAGAUUCAUCAGCAUUUCCCUGCCGGUCGUUUGGAAAUCGAA------UUUUCCACCCGUCAAACGCCAGUCGCCA .........(((((.(((.(((...((((.((((((((..((((.(......).)))))))))))))))).((..((((((.....------.))))))..))))).)))....))))). ( -38.70) >DroAna_CAF1 141276 120 + 1 ACGAGGGGGGGUGGACGGAAAAUGUCCGGGUACGGCUCGGACUUCAGUUUGGCCAUCAGGUCGAGGGCGCUCUGGUGGAAGUCCCAGCUGGUCUUCCCGUCCGGCAAUCGCCACUCCCCG .....((((((((((((((.....)))(((..(((((.(((((((..(((((((....)))))))..(((....)))))))))).))))).....)))))))(((....)))))))))). ( -60.90) >consensus AGCAAAACGGGCGGAUGGAUUAUCUCCGGAUAGGGAAAUUUGCUUAGAUUCAUCAGCAUUUCCUUGCCGGUAGUCUCGAAAUCGAA______UUCUCCACCCCGCAAACGCCAGUCUCCA ......((.((((............((((.((((((((..((((..........))))))))))))))))((.....)).............................)))).))..... (-15.25 = -15.45 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:13 2006