Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,360,784 – 7,360,874 |
Length | 90 |
Max. P | 0.577795 |
Location | 7,360,784 – 7,360,874 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 76.81 |
Mean single sequence MFE | -20.66 |
Consensus MFE | -11.58 |
Energy contribution | -12.51 |
Covariance contribution | 0.93 |
Combinations/Pair | 1.06 |
Mean z-score | -1.59 |
Structure conservation index | 0.56 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7360784 90 + 22224390 AUCUCAUUGGCCAGUUAGCCAGUCAUCC-------------------AGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA .....((((((.((.(((((((......-------------------..)))))))...))....)))))).....((((((...................)))))).. ( -19.81) >DroSec_CAF1 109583 90 + 1 AUCACGUUGGUCAGUUAGCCAGUCAUCC-------------------AGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA ....(((.(((..(((.(((((......-------------------.((((((...........))))))......))))))))....))).)))............. ( -19.82) >DroSim_CAF1 109480 90 + 1 AUCACGUUGGUCAGUUAGCCAGUCAUCC-------------------AGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA ....(((.(((..(((.(((((......-------------------.((((((...........))))))......))))))))....))).)))............. ( -19.82) >DroEre_CAF1 121062 82 + 1 AUCUCGCUGGCCAGUUAUCC---------------------------AGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA .....((((.((((......---------------------------.((((((...........))))))......)))))))).........(((.....))).... ( -21.22) >DroYak_CAF1 142528 109 + 1 AUCUCGUUGGCCAGUUGGCCAGUUAGCCAGUUAGCCAGUUAUCCCGAAGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA ..((..((((((....))))))..))((((.((((((..(.......)..)))))).)).(((((((((.........)))))).)))................))... ( -28.30) >DroAna_CAF1 119982 69 + 1 AUUGCUUUCG---------------CCC-------------------CGUUCGCU---CCGUUCUGCCAAUAAAAAUCUGGCAGCAAAAAAUU---AAAGCGUCGGAAG ..........---------------..(-------------------((..((((---..(((((((((.........)))))).....))).---..)))).)))... ( -15.00) >consensus AUCUCGUUGGCCAGUUAGCCAGUCAUCC___________________AGUUGGCUAUCUCUUUCUGCCAAUAAAAAUCUGGCAGCAAAAAUCUACGAAAAAGUCGGAAA .......((((......))))...........................((((((...........)))))).....((((((...................)))))).. (-11.58 = -12.51 + 0.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:05 2006