Locus 2738

Sequence ID X_DroMel_CAF1
Location 7,359,784 – 7,359,893
Length 109
Max. P 0.949673
window4475

overview

Window 5

Location 7,359,784 – 7,359,893
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.67
Mean single sequence MFE -25.52
Consensus MFE -14.29
Energy contribution -14.18
Covariance contribution -0.11
Combinations/Pair 1.11
Mean z-score -2.36
Structure conservation index 0.56
SVM decision value 1.39
SVM RNA-class probability 0.949673
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 7359784 109 - 22224390
AGUGGAAG-AAAAUAUUCGCGUU-----GCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGC--AGCAAC---AACCACACAG
.(((((((-((....)))(((((-----((((((((((.......))))))))).)))).........((.....)))).....)))))).(((((((.--......---..))))))). ( -30.80)
>DroVir_CAF1 145613 114 - 1
GCAGCUAC-AAAAACGCCGCCUCGUU-CGCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGC--AACAACUGAAACUGCA--A
((((...(-(.....(((((..(((.-.((((((((((.......))))))))))............(((.......)))..........))).)))))--......))...)))).--. ( -21.90)
>DroGri_CAF1 136038 115 - 1
GCAGCAGCGAAAAGCGCCGUGUCGUU-CACUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCAAAAUUUCCACAUGUGUGGC--AACAACUGAAACUGCA--G
(((((((......((((..(((.(((-.((((((((((.......)))))))))).........))).)))....)))).......((((....)))).--.....)))...)))).--. ( -26.50)
>DroSim_CAF1 108470 101 - 1
AGUGGAAG-A--------GCGUU-----GCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGC--AGCAAC---AACCACACAG
.(((((((-.--------(((((-----((((((((((.......))))))))).)))).........((.....))))....))))))).(((((((.--......---..))))))). ( -29.60)
>DroWil_CAF1 119705 91 - 1
---------AUGAUG-GCGCGUUGCUCCGCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGC---AGC----------------
---------....((-(((((((((...((((((((((.......)))))))))).............)))..)))))).)).....(((....))).---...---------------- ( -20.59)
>DroAna_CAF1 118993 107 - 1
AGUGGAAG-AAAAUAUUCGCGUU-----GCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGCGCGGCAAC---AACAGC----
.(((((..-......)))))(((-----((((((((((.......)))))))).....................((((((((...........))).))))))))))---......---- ( -23.70)
>consensus
AGUGGAAG_AAAAUA_CCGCGUU_____GCUAACGAAUCAAAUAAAUUUGUUGGUCAAUUAAAAAACUGCAAAACGCGCACAAUUUCCACAUGUGUGGC__AGCAAC___AACCGCA__G
..................((........((((((((((.......)))))))))).............((.....)))).......((((....))))...................... (-14.29 = -14.18 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:04 2006