| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 7,338,024 – 7,338,123 |
| Length | 99 |
| Max. P | 0.919055 |
| Location | 7,338,024 – 7,338,123 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 88.81 |
| Mean single sequence MFE | -16.53 |
| Consensus MFE | -14.39 |
| Energy contribution | -14.50 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919055 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7338024 99 - 22224390 UUUUU-UUUCCCCCUAUCCUCGCCUGUCUUCUCAAUCCUCGUUCCCUACUUUUUGGUUUUUUAUUGGUAUACCAAUGGGUAUCACCCAAUGAGUCAUGUU .....-...............................((((((.((........))......(((((....)))))(((.....)))))))))....... ( -13.30) >DroSec_CAF1 86873 95 - 1 UUUUUUUUUUUUCCUAUCUUCGC-UGGCUUCUCAAUCCUCGUUC-UUACUUUUUGGUUAUUUAUUGGUAUACCAAUGAGUA---CCCAAUGAGUCAUUUG .......................-((((((..........((..-..))...((((.((((((((((....))))))))))---.)))).)))))).... ( -18.60) >DroSim_CAF1 86810 95 - 1 UUUUU-UUUUUUCCUAUCUUCGCCUGGCUUCUCAAUCCUCGUUC-AUACUUUUUGGUUAUUUAUUGGUAUACCAAUGGGUA---CCCAAUGAGUCAUUUG .....-..................((((((..........((..-..))...((((.((((((((((....))))))))))---.)))).)))))).... ( -17.70) >consensus UUUUU_UUUUUUCCUAUCUUCGCCUGGCUUCUCAAUCCUCGUUC_AUACUUUUUGGUUAUUUAUUGGUAUACCAAUGGGUA___CCCAAUGAGUCAUUUG ...............................................((((.((((.((((((((((....))))))))))....)))).))))...... (-14.39 = -14.50 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:00 2006