Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,333,875 – 7,333,970 |
Length | 95 |
Max. P | 0.735522 |
Location | 7,333,875 – 7,333,970 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 68.05 |
Mean single sequence MFE | -33.43 |
Consensus MFE | -9.88 |
Energy contribution | -10.22 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.38 |
Mean z-score | -2.05 |
Structure conservation index | 0.30 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.735522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7333875 95 - 22224390 GUCGUC---AAAG-----GG---------GACGAAAUAUGGGGCCGAAGGACCCCCAUUUCAGCCAGCACCCCGCUU--AACCACAUUCAUAUGGUGCAGACACCCCGUCAUAU ......---...(-----((---------(..(((((..((((.(....).)))).))))).....(((((......--..............))))).....))))....... ( -27.55) >DroPse_CAF1 119513 86 - 1 GCCGCU---ACUG-----GGGGGGC---------------GUGCCGUCUGAUCCC-GGGUCGGUCUGUUUCUGUUCC--AUCUAUAGUCAUAUGGUGGAGAC--CCUCACAGAU ......---.(((-----(((((((---------------(.((((((((....)-))).)))).))).....((((--(.(((((....)))))))))).)--)))).))).. ( -31.00) >DroSec_CAF1 82593 95 - 1 GUCGUC---AAAG-----GG---------GACGAAAUAUGGGACCGAAGGACCCCCAUUUCGGCCAGCACCCCCCUU--AACCACAUUCAUAUGGUGCAGACACCCCGCCAUAU ((.((.---.(((-----((---------(.((((((..(((.((...)).)))..))))))(....)...))))))--.)).))....((((((((.........)))))))) ( -27.30) >DroSim_CAF1 82651 95 - 1 GUCGUC---AAAG-----GG---------GACGAAAUAUGGGGCCGAAGGACCCCCAUUUCGGCCAGCACCCCCCUU--AACCACAUUCAUAUGGUGCAGACACCCCGCCAUAU .(((((---....-----..---------))))).((((((((((((((........)))))))).(((((......--..............)))))..........)))))) ( -31.25) >DroEre_CAF1 92647 103 - 1 GUCGUCCUCGAAGGAGUGGG-GGGCGGGGGGCGAAAUAUGGGGCCGAAGGACCCCCAUUUCAGC-------CCCCU---AACCGCUUUCAUAUGGCGCAGACACCCCGCCAUAU ......(((....)))..(.-.(((((((((((((((..((((.(....).)))).))))).))-------)))..---..)))))..)((((((((.........)))))))) ( -47.70) >DroYak_CAF1 110634 93 - 1 GUCGUC---AAAG-----GG-GGAAGG------------GGGGUCGAAGGACCUCCAUUUCAGCAAACCCCCCCCUUGAAACCACAUUCAUAUGGCGCAGACAACCCGCCAUAU ((.((.---.(((-----((-((...(------------((((((....))))))).(((....)))...)))))))...)).))....((((((((.........)))))))) ( -35.80) >consensus GUCGUC___AAAG_____GG_________GACGAAAUAUGGGGCCGAAGGACCCCCAUUUCAGCCAGCACCCCCCUU__AACCACAUUCAUAUGGUGCAGACACCCCGCCAUAU .......................................((((.(....).))))..................................((((((((.........)))))))) ( -9.88 = -10.22 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:42:00 2006