Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,333,178 – 7,333,277 |
Length | 99 |
Max. P | 0.917422 |
Location | 7,333,178 – 7,333,277 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 77.00 |
Mean single sequence MFE | -27.80 |
Consensus MFE | -19.36 |
Energy contribution | -19.20 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.24 |
Mean z-score | -1.65 |
Structure conservation index | 0.70 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7333178 99 - 22224390 GGUCAUCGGUUGUCCUUUCUUCUCGACGCAUUGACCCAA--GCAUCUAGAUUUGCGGCCA-AAGUUAGCGUUUGACAUUUAUGCCGGAUGUCAAGUUGUCCC ((((.(((((((((..........)))).))))).....--(((........))))))).-....((((...((((((((.....)))))))).)))).... ( -21.70) >DroPse_CAF1 118777 97 - 1 GGAUUCUGGAUGGACAAUUUUGUCGAUGCAUUGACCCGA---CAUGUAG-UUUGUGGUUA-AAGUUGGCGUUUGACAUUUAUGCCGGAUGUCAAGCAGUCCG ...........((((......((((((...(((((((((---.......-.))).)))))-).))))))(((((((((((.....))))))))))).)))). ( -31.60) >DroGri_CAF1 108367 92 - 1 -GUCAGUC---ACA-CAUUUUGUCAAUGCAUUGACCCAA---CAUGUAU-UUUGUGGUCA-AAGUUGCCGUUUGACAUUUAUACCGGAUGUCAAGCGGACGG -....(((---...-............((((((((((((---.......-.))).)))))-)...)))((((((((((((.....))))))))))))))).. ( -28.10) >DroEre_CAF1 91938 99 - 1 GGUCAUCGGUUGUCCUUUCUUCUCGAUGCAUUGACCCAA--CCAUCUAGUUUUGCGGUCA-AAGUUGGCGUUUGACAUUCAUGCCGGAUGUCAAGUCGUCCC .(.((((((..(......)...))))))).(((((((((--..........))).)))))-)....((((((((((((((.....)))))))))).)))).. ( -28.30) >DroWil_CAF1 95825 91 - 1 GGACA----------CUUUUUGUCAAUGCAUUGACCCAACAACAUGUAU-UUUGUGGUCAAAAGUUGGCGUUUGACAUUUAUGCCGGAUGUCAACCCAGCCC .((((----------.....))))......((((((..((((.......-.))))))))))..(((((.(((.(((((((.....))))))))))))))).. ( -25.70) >DroPer_CAF1 150455 97 - 1 GGAUUCUGGAUGGACAAUUUUGUCGAUUCAUUGACCCGA---CAUGUAG-UUUGUGGUUA-AAGUUGGCGUUUGACAUUUAUGCCGGAUGUCAAGCAGUCCG ...........((((......(((((((..(((((((((---.......-.))).)))))-))))))))(((((((((((.....))))))))))).)))). ( -31.40) >consensus GGACACUGG_UGGACAAUUUUGUCGAUGCAUUGACCCAA___CAUGUAG_UUUGUGGUCA_AAGUUGGCGUUUGACAUUUAUGCCGGAUGUCAAGCAGUCCC .....................((((((....((((((((............))).)))))...))))))(((((((((((.....)))))))))))...... (-19.36 = -19.20 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:59 2006