Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,332,508 – 7,332,599 |
Length | 91 |
Max. P | 0.694729 |
Location | 7,332,508 – 7,332,599 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 79.34 |
Mean single sequence MFE | -21.74 |
Consensus MFE | -13.64 |
Energy contribution | -14.20 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.19 |
Mean z-score | -1.85 |
Structure conservation index | 0.63 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7332508 91 - 22224390 GAGAGUUUGAUAUUGGUGGGGGUUUUGGUUCCAAAGGGAAACGUAGCAUAA---UCAUACCCAGUACAACAUUUUCAGACAAAGAAAACGAUUG ....((((((...((.((.((((..(((((....(.(....).).....))---))).))))....)).))...)))))).............. ( -19.00) >DroSec_CAF1 81229 83 - 1 GAGAGUUUGAUAUUGGUGGGGGGCUUCGUUCCAAAGGGAAACGAAGCAUAC---UCCUACCCAAUA---CAUUUUCAGACAAAGAAAAC----- ....((((((((((((((((((((((((((((....)).))))))))...)---))))).))))))---.....)))))).........----- ( -31.40) >DroYak_CAF1 109128 86 - 1 GAGAGUUUGAUAUUGGUUGGGUCUUAAGUUGCAAAGGGAAUCUUAACAUACCCCUCCUACCAAAUA---CAUUUUCAGACAAAGAAAGC----- ....((((((...((.((((((........))..((((.............))))....))))...---))...)))))).........----- ( -14.82) >consensus GAGAGUUUGAUAUUGGUGGGGGCUUUAGUUCCAAAGGGAAACGUAGCAUAC___UCCUACCCAAUA___CAUUUUCAGACAAAGAAAAC_____ ....(((((((((((((((((..(((((((((....)))).)))))........))))))).))))........)))))).............. (-13.64 = -14.20 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:58 2006