Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,328,626 – 7,328,728 |
Length | 102 |
Max. P | 0.764956 |
Location | 7,328,626 – 7,328,728 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 88.80 |
Mean single sequence MFE | -34.72 |
Consensus MFE | -26.03 |
Energy contribution | -26.47 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.03 |
Mean z-score | -1.88 |
Structure conservation index | 0.75 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.764956 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7328626 102 - 22224390 ACUGGCCCACUGAGAGAGUAGAUG------GUGGGUUGAUGGGUGAGGGGGGAAAAUGGUGGGCAAAGUG-GGCGUGGCGCUACUUCAUUUUCUACUUCAUUGCCAAAG ...((((((((............)------)))))))..(((((((((..((((((((((((((...(..-..)...)).))))..)))))))).))))))..)))... ( -33.10) >DroSec_CAF1 77307 100 - 1 ACUGGCCCACUGAGAGA---GGUG------GUGGGUUGGUGGAUGAGGGGGGAAAAUGGUGGGCAAAGUGGGGCGUGGCGCUACUGCAUUUUCUACUUCAUUGCCAAAG ((..(((((((......---...)------))))))..)).(((((((..(((((((((....)..(((((.((...)).))))).)))))))).)))))))....... ( -37.60) >DroSim_CAF1 76881 99 - 1 ACUGGCCCACUGAGAGA---GGUG------GUGGGUUGGUGGGUGAGGGGGGAAAAUGGUGGGCAAAGUG-GGCGUGGCGCUACUUCAUUUUCUACUUCAUUGCCAAAG ((..(((((((......---...)------))))))..))((((((((..((((((((((((((...(..-..)...)).))))..)))))))).))))))..)).... ( -37.40) >DroEre_CAF1 87458 102 - 1 ACUGGCCCACUGAGUUG---GGUGGUGGUGGUGGAUU---GGGCGCGGCGGGUAAAUGGUGGGCAAAGUG-GGCGUGGCGCUACUUCAUUUUCUACUUCAUUGCCAAAG ....(((((......))---)))..(((..(((((.(---((((.((.((......)).)).)).(((((-(((...)).))))))......))).)))))..)))... ( -32.40) >DroYak_CAF1 105120 95 - 1 ACUGGCCCACUGAGAUA---GGUG------GUGGAUU---CGGUGAGG-GGGAAAAUGGUGGGCAAAGUG-GGCGUGGCGCUACUUCAUUUUCUACUUCAUUGCCAAAG ..(((((((((......---))))------)......---.(((((((-..(((((((((((((...(..-..)...)).))))..)))))))..)))))))))))... ( -33.10) >consensus ACUGGCCCACUGAGAGA___GGUG______GUGGGUUG_UGGGUGAGGGGGGAAAAUGGUGGGCAAAGUG_GGCGUGGCGCUACUUCAUUUUCUACUUCAUUGCCAAAG ..((((((((....................)))).......(((((((..((((((((((((((...(.....)...)).))))..)))))))).)))))))))))... (-26.03 = -26.47 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:57 2006