Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 916,517 – 916,659 |
Length | 142 |
Max. P | 0.973303 |
Location | 916,517 – 916,628 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.01 |
Mean single sequence MFE | -31.12 |
Consensus MFE | -23.74 |
Energy contribution | -24.18 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.04 |
Mean z-score | -1.51 |
Structure conservation index | 0.76 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525813 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 916517 111 + 22224390 AAAUUCAAAUUAAAAUUUUGCGAAAACACUUCUUUC---CCAGCUGCAC------CAGUGUGUGCAUGCCCGCAGGGUAAGCAGCUGGCAGCGCUUUUGAAACAGUGUGCACACAUCUCU ..................(((...............---((((((((((------(..((((.(....).)))).)))..))))))))..(((((........))))))))......... ( -28.40) >DroSec_CAF1 7994 111 + 1 AAAUUCAAAUUAAAAUUUUGCGAAAACACUUUUUUC---CCAGCUGCAC------CAGUGUGUGCAUGCCCGCAGGAUAAGCAGCUGGCAGCGCUUUUGAAACAGUGUGCACACAUCUCU ...((((((..........(((((((.....)))))---((((((((.(------(.(((.((....)).))).))....))))))))....)).))))))...(((....)))...... ( -26.10) >DroSim_CAF1 8160 111 + 1 AAAUUCAAAUUAAAAUUUUGCGAAAACACUUCUUUC---CCAGCUGCAC------CAGUGUGUGCAUGCCCGCAGGGUAAGCAGCUGGCAGCGCUUUUGAAACAGUGUGCACACAUCUCU ..................(((...............---((((((((((------(..((((.(....).)))).)))..))))))))..(((((........))))))))......... ( -28.40) >DroEre_CAF1 9237 111 + 1 AAAUUCAAAUUAAAAUUCUGCAAAAACACUGCUCUC---CCAGCUGCAC------CAGUGUGUGCACGCCCGCAGGGUAAGCAGCUGGCAGCGCUUUCGAAACAGUGUGCACACAUCUCU ..................(((....(((((((.((.---((((((((..------..(((....)))((((...))))..)))))))).)).)).........))))))))......... ( -31.70) >DroYak_CAF1 8561 120 + 1 AAAUUCAAAUUAAAGUUGUGCAAAAACACAGCUCGCUCCGCAGCUGCACUGCGUCCAGUGUGUGCAUGUCCGCAGGCUAAGCAGCUGGCAGCGCUUUGGAAACAGUGUGCACACAUCUCU .............(((((((......))))))).((....(((((((.(((((..((.((....))))..))))).....))))))))).((((.(((....))).)))).......... ( -41.00) >consensus AAAUUCAAAUUAAAAUUUUGCGAAAACACUUCUUUC___CCAGCUGCAC______CAGUGUGUGCAUGCCCGCAGGGUAAGCAGCUGGCAGCGCUUUUGAAACAGUGUGCACACAUCUCU ..................(((..................((((((((..........(((....)))((((...))))..))))))))..(((((........))))))))......... (-23.74 = -24.18 + 0.44)
Location | 916,554 – 916,659 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 93.58 |
Mean single sequence MFE | -37.62 |
Consensus MFE | -34.14 |
Energy contribution | -33.58 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.10 |
Mean z-score | -1.61 |
Structure conservation index | 0.91 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 916554 105 - 22224390 UGCCCUGCGGGGUCAAAUAAUUACUAUGCCUAGAGAUGUGUGCACACUGUUUCAAAAGCGCUGCCAGCUGCUUACCCUGCGGGCAUGCACACACUG------GUGCAGCUG (((((.(((((((...................((((((((....))).)))))..((((((.....)).))))))))))))))))(((((......------))))).... ( -38.90) >DroSec_CAF1 8031 105 - 1 UGCCCUGCGGGGUCAAAUAAUUACUAUGCCUAGAGAUGUGUGCACACUGUUUCAAAAGCGCUGCCAGCUGCUUAUCCUGCGGGCAUGCACACACUG------GUGCAGCUG (((((.(((((((...................((((((((....))).)))))..((((((.....)).))))))))))))))))(((((......------))))).... ( -36.30) >DroSim_CAF1 8197 105 - 1 UGCCCUGCGGGGUCAAAUAAUUACUAUGCCUAGAGAUGUGUGCACACUGUUUCAAAAGCGCUGCCAGCUGCUUACCCUGCGGGCAUGCACACACUG------GUGCAGCUG (((((.(((((((...................((((((((....))).)))))..((((((.....)).))))))))))))))))(((((......------))))).... ( -38.90) >DroEre_CAF1 9274 105 - 1 UGCCCUGCGGCGCCAAAUAAUUACUAUGCCUAGAGAUGUGUGCACACUGUUUCGAAAGCGCUGCCAGCUGCUUACCCUGCGGGCGUGCACACACUG------GUGCAGCUG ......((.((((((........(((....)))...(((((((((.((((...(.((((((.....)).)))).)...))))..))))))))).))------)))).)).. ( -37.90) >DroYak_CAF1 8601 111 - 1 CGUCCUGCGGGCACAAAUAAUUACUAUGCCUAGAGAUGUGUGCACACUGUUUCCAAAGCGCUGCCAGCUGCUUAGCCUGCGGACAUGCACACACUGGACGCAGUGCAGCUG .(..(((((((((.............))))...((.((((((((..((((...(.((((((.....)).)))).)...))))...))))))))))...)))))..)..... ( -36.12) >consensus UGCCCUGCGGGGUCAAAUAAUUACUAUGCCUAGAGAUGUGUGCACACUGUUUCAAAAGCGCUGCCAGCUGCUUACCCUGCGGGCAUGCACACACUG______GUGCAGCUG .((((.((((((....................((((((((....))).)))))..((((((.....)).)))).)))))))))).(((((............))))).... (-34.14 = -33.58 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:35 2006