Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,313,096 – 7,313,201 |
Length | 105 |
Max. P | 0.724468 |
Location | 7,313,096 – 7,313,201 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 89.54 |
Mean single sequence MFE | -23.73 |
Consensus MFE | -20.70 |
Energy contribution | -20.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 0.87 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724468 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7313096 105 - 22224390 -GGAAGAAAAAGAGAGGGAAUAAGAAAGCGCUGAAUGUGUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUUUUUUCUAUGCAA -...........(((((((((....(((((.(((.((((((.((((((((.......))))))))....)))))).)))..))).))....)))))))))...... ( -23.40) >DroPse_CAF1 95235 102 - 1 -GGUUGUUACAAAGGGUGAGCC--AGAGCGCUGAAUGUAUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUU-UUUCUAUGCAG -(((..((((.....)))))))--...(((..((((((.((((((((.....)))))))).))).(((.((((........))))..)))....-.)))..))).. ( -23.30) >DroSim_CAF1 62557 105 - 1 -GGAAGAAAAAGAGAAGGAAUAAGAAAGCGCUGAAUGUGUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUUUUUUCUAUGCAA -...........(((((((((....(((((.(((.((((((.((((((((.......))))))))....)))))).)))..))).))....)))))))))...... ( -23.80) >DroEre_CAF1 73424 105 - 1 -GAAUGAAAAAGAGAGGGAGUAAGAAAGCGCUGAAUGUGUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUUUUUUCUAUGCAG -...........(((((((((....(((((.(((.((((((.((((((((.......))))))))....)))))).)))..))).))....)))))))))...... ( -23.40) >DroYak_CAF1 90874 106 - 1 AGAAAGAGAAGGAGAGGGAGCAAGAAAGCGCUGAAUGUGUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUUUUUUCUAUGCAA .........((((((((..((((....(((.(((.((((((.((((((((.......))))))))....)))))).)))..))).))))...))))))))...... ( -25.20) >DroPer_CAF1 125176 102 - 1 -GGUUGUUACAAAGGGUGAGCC--AGAGCGCUGAAUGUAUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUU-UUUCUAUGCAG -(((..((((.....)))))))--...(((..((((((.((((((((.....)))))))).))).(((.((((........))))..)))....-.)))..))).. ( -23.30) >consensus _GGAAGAAAAAGAGAGGGAGCAAGAAAGCGCUGAAUGUGUAUUUGUCUACAUGACAAGUAGGCAAUAUUUGCAUACUCAAUUGCAUUGUAAAUUUUUUCUAUGCAA ...........................(((..((((((.((((((((.....)))))))).))).(((.((((........))))..)))......)))..))).. (-20.70 = -20.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:53 2006