Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 7,309,122 – 7,309,228 |
Length | 106 |
Max. P | 0.533980 |
Location | 7,309,122 – 7,309,228 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 69.27 |
Mean single sequence MFE | -19.85 |
Consensus MFE | -11.32 |
Energy contribution | -12.12 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.43 |
Structure conservation index | 0.57 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 7309122 106 - 22224390 GACUGCAUGUGUGUGUUCUAGAUUCACAGCUGUAGUCAAGAACAUACAUAUAUAUUAGAAAUAUAUUAGAAACACAGCUAUAAACCCCGGUCAUAGGUAAUAGAAA (((((.(((((((((((((.((((.((....)))))).)))))))))))))...............(((........))).......))))).............. ( -24.90) >DroSec_CAF1 58844 104 - 1 GACUGCAUGUGUGAG--CAAGAUUCACAGCUGUAGUCAAGAACAUACAUAUAUUCGAUAUAUACAUUAGAAAGACAGCUAUAUACGCCGGUUGUUAGUAAUAGAAA (((((((..((((((--.....))))))..))))))).......(((.(((((.....))))).........(((((((.........))))))).)))....... ( -22.40) >DroSim_CAF1 58485 100 - 1 GACUGCAUGUGUGAG--CAAGAUUCACAGCUGUAGUCAAGAACAUACAUAUAUUCGAUAUAUAUAUUAGAAA----GCUAUAUACGCCGGUUGUUAGUAAUAGAAA (((((((..((((((--.....))))))..)))))))..........((((((.....))))))........----((((...((....))...))))........ ( -19.70) >DroEre_CAF1 69289 84 - 1 GACUGCAUGUGUGCG--CCAGUUUCACAGCUGUAGUCAGCAAUAUAUCUGUAUUCAAAGUAU--AUUCGAAAAAGAA--------CCCAA-CACCAA--------- (((((((((((.((.--...))..))))..))))))).(.((((((.((........)))))--)))).........--------.....-......--------- ( -16.20) >DroYak_CAF1 86671 90 - 1 CACUGCAUGUGUGAG--CCAGUUUCACAGCUCUAGUCAAUAAUAUA----UACUCGAAAUAU--ACUAGAAGAAAAA--------CCCGCUUAUUAGCAGGAGAAA ..((((....(((((--(..((((......((((((..........----............--))))))....)))--------)..))))))..))))...... ( -16.05) >consensus GACUGCAUGUGUGAG__CAAGAUUCACAGCUGUAGUCAAGAACAUACAUAUAUUCGAAAUAUA_AUUAGAAAAACAGCUAUA_ACCCCGGUUAUUAGUAAUAGAAA (((((((..((((((.......))))))..)))))))..................................................................... (-11.32 = -12.12 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:41:52 2006